Evidence map›Paper›PMID 35409292›Full record

ArticleInternational journal of molecular sciences2022

Glycoproteomic and Phenotypic Elucidation of

Linn Stenfelt, Jonas Nilsson, Åsa Hellberg, Yew Wah Liew, Jenny Morrison, Göran Larson, Martin L Olsson

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Linn StenfeltDivision of Hematology and Transfusion Medicine, Department of Laboratory Medicine, Lund University, SE 221 85 Lund, Sweden.
Jonas NilssonProteomics Core Facility, Sahlgrenska Academy at the University of Gothenburg, SE 405 30 Gothenburg, Sweden.
Åsa HellbergDepartment of Clinical Immunology and Transfusion Medicine, Office for Medical Services, Region Skåne, SE 221 85 Lund, Sweden.ORCID 0000-0002-7000-1899
Yew Wah LiewRed Cell Reference Laboratory, Clinical Services and Research, Australian Red Cross Lifeblood, Kelvin Grove, Brisbane, QLD 4059, Australia.
Jenny MorrisonRed Cell Reference Laboratory, Clinical Services and Research, Australian Red Cross Lifeblood, Kelvin Grove, Brisbane, QLD 4059, Australia.
Göran LarsonLaboratory of Clinical Chemistry, Sahlgrenska University Hospital, SE 413 45 Gothenburg, Sweden.ORCID 0000-0002-2616-0366
Martin L OlssonDivision of Hematology and Transfusion Medicine, Department of Laboratory Medicine, Lund University, SE 221 85 Lund, Sweden.ORCID 0000-0003-1647-9610
Australian Red Cross Lifeblood · AULund University · SESahlgrenska University Hospital · SEUniversity of Gothenburg · SE

Funding

ALF ALFSKANE-446521, ALFGBG-721971Knut and Alice Wallenberg Foundation 2014.0312, 2020.0234Swedish Research Council 2014-71X-14251, 2019-01683Swedish Research Council K2014-68X08266-27-4, 2017-00955
6 · The paper itself

Abstract

The Sda histo-blood group antigen (GalNAcβ1-4(NeuAcα2-3)Galβ-R) is implicated in various infections and constitutes a potential biomarker for colon cancer. Sd(a−) individuals (2−4% of Europeans) may produce anti-Sda, which can lead to incompatible blood transfusions, especially if donors with the high-expressing Sd(a++)/Cad phenotype are involved. We previously reported the association of B4GALNT2 mutations with Sd(a−), which established the SID blood-group system. The present study provides causal proof underpinning this correlation. Sd(a−) HEK293 cells were transfected with different B4GALNT2 constructs and evaluated by immunostaining and glycoproteomics. The predominant SIDnull candidate allele with rs7224888:T>C (p.Cys406Arg) abolished Sda synthesis, while this antigen was detectable as N- or O-glycans on glycoproteins following transfection of wildtype B4GALNT2. Surprisingly, two rare missense variants, rs148441237:A>G and rs61743617:C>T, found in a Sd(a−) compound heterozygote, gave results similar to wildtype. To elucidate on whether Sd(a++)/Cad also depends on B4GALNT2 alterations, this gene was sequenced in five individuals. No Cad-specific changes were identified, but a detailed erythroid Cad glycoprotein profile was obtained, especially for glycophorin-A (GLPA) O-glycosylation, equilibrative nucleoside transporter 1 (S29A1) O-glycosylation, and band 3 anion transport protein (B3AT) N-glycosylation. In conclusion, the p.Cys406Arg β4GalNAc-T2 variant causes Sda-deficiency in humans, while the enigmatic Cad phenotype remains unresolved, albeit further characterized.

Indexed as

Blood Group AntigensN-AcetylgalactosaminyltransferasesHEK293 CellsHumansPhenotypebeta-1,4-N-acetyl-galactosaminyl transferase 2Blood Group AntigensN-Acetylgalactosaminyltransferasescarbohydrate biosynthesiserythrocyteflow cytometrygene expressionglycobiologyglycopeptideglycoproteinglycosyltransferasemass spectrometry (MS)SID blood group system

Identifiers

PMID35409292
PMCPMC8999409
OpenAlexW4223468850

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.