Evidence map›Paper›PMID 35405922›Full record

ArticleAnimals : an open access journal from MDPI2022

Integrative Analyses of Antler Cartilage Transcriptome and Proteome of Gansu Red Deer (

Yanxia Chen, Zhenxiang Zhang, Wenjie Jin, Zhaonan Li, Changhong Bao, Caixia He, Yuqin Guo, Changzhong Li

Open access · goldAbstract read
In one paragraph

Article in Animals : an open access journal from MDPI, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yanxia ChenCollege of Eco-Environment Engineering, Qinghai University, Xining 810016, China.ORCID 0000-0003-1265-6544
Zhenxiang ZhangQinghai Academy of Animal Science and Veterinary Medicine, Qinghai University, Xining 810016, China.ORCID 0000-0003-0300-9580
Wenjie JinCollege of Eco-Environment Engineering, Qinghai University, Xining 810016, China.
Zhaonan LiCollege of Eco-Environment Engineering, Qinghai University, Xining 810016, China.ORCID 0000-0002-4444-9163
Changhong BaoCollege of Eco-Environment Engineering, Qinghai University, Xining 810016, China.ORCID 0000-0002-3546-0408
Caixia HeCollege of Eco-Environment Engineering, Qinghai University, Xining 810016, China.ORCID 0000-0003-3125-9106
Yuqin GuoResearch Monitoring and Evaluation Center of Qinghai National Park, Xining 810016, China.ORCID 0000-0001-8879-6733
Changzhong LiCollege of Eco-Environment Engineering, Qinghai University, Xining 810016, China.
Qinghai University · CN

Funding

Science and Technology Innovation Project of Three River Source First-class Discipline, College of Ecology-Environment Engineering, Qinghai University 2021-JS-02The Doctoral Scientific Research Start-up Foundation of Qinghai University 2021BS-10
6 · The paper itself

Abstract

The velvet antler is a unique model for cancer and regeneration research due to its periodic regeneration and rapid growth. Antler growth is mainly triggered by the growth center located in its tip, which consists of velvet skin, mesenchyme and cartilage. Among them, cartilage accounts for most of the growth center. We performed an integrative analysis of the antler cartilage transcriptome and proteome at different antler growth stages. RNA-seq results revealed 24,778 unigenes, 19,243 known protein-coding genes, and 5535 new predicted genes. Of these, 2722 were detected with differential expression patterns among 30 d, 60 d, and 90 d libraries, and 488 differentially expressed genes (DEGs) were screened at 30 d vs. 60 d and 60 d vs. 90 d but not at 30 d vs. 90 d. Proteomic data identified 1361 known proteins and 179 predicted novel proteins. Comparative analyses showed 382 differentially expressed proteins (DEPs), of which 16 had differential expression levels at 30 d vs. 60 d and 60 d vs. 90 d but not at 30 d vs. 90 d. An integrated analysis conducted for DEGs and DEPs showed that gene13546 and its coding protein protein13546 annotated in the Wnt signaling pathway may possess important bio-logical functions in rapid antler growth. This study provides in-depth characterization of candidate genes and proteins, providing further insights into the molecular mechanisms controlling antler development.

Indexed as

antlerCervus elaphus kansuensisendochondral ossificationhistogenesismulti-omicsrapid growth

Identifiers

PMID35405922
PMCPMC8997108
OpenAlexW4223489160

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.