Evidence map›Paper›PMID 35405385›Full record

ArticleEBioMedicine2022

Pathogenicity of SARS-CoV-2 Omicron (R346K) variant in Syrian hamsters and its cross-neutralization with different variants of concern.

Sreelekshmy Mohandas, Pragya D Yadav, Gajanan Sapkal, Anita M Shete, Gururaj Deshpande, Dimpal A Nyayanit, Deepak Patil, Manoj Kadam, Abhimanyu Kumar, Chandrashekhar Mote and 1 more

Open access · goldAbstract read
In one paragraph

Article in EBioMedicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 41 citations in OpenAlex.

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  14. Recent insights into SARS-CoV-2 omicron variant.Reviews in medical virology · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Sreelekshmy MohandasMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology (ICMR-NIV), Pune, Maharashtra 411021, India.
Pragya D YadavMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology (ICMR-NIV), Pune, Maharashtra 411021, India. Electronic address: hellopragya22@gmail.com.
Gajanan SapkalMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology (ICMR-NIV), Pune, Maharashtra 411021, India.
Anita M SheteMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology (ICMR-NIV), Pune, Maharashtra 411021, India.
Gururaj DeshpandeMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology (ICMR-NIV), Pune, Maharashtra 411021, India.
Dimpal A NyayanitMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology (ICMR-NIV), Pune, Maharashtra 411021, India.
Deepak PatilMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology (ICMR-NIV), Pune, Maharashtra 411021, India.
Manoj KadamMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology (ICMR-NIV), Pune, Maharashtra 411021, India; Krantisinh Nana Patil College of Veterinary Science, Shirwal, Maharashtra 412801, India.
Abhimanyu KumarMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology (ICMR-NIV), Pune, Maharashtra 411021, India; Krantisinh Nana Patil College of Veterinary Science, Shirwal, Maharashtra 412801, India.
Chandrashekhar MoteKrantisinh Nana Patil College of Veterinary Science, Shirwal, Maharashtra 412801, India.
Rajlaxmi JainMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology (ICMR-NIV), Pune, Maharashtra 411021, India.
ICMR-National Institute of Virology · INKrantisinh Nana Patil College of Veterinary Science · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSARS-CoV-2 Omicron variant is rampantly spreading across the globe. We assessed the pathogenicity and immune response generated by BA.1.1 sub-lineage of SARS-CoV-2 [Omicron (R346K) variant] in 5 to 6-week old Syrian hamsters and compared the observations with that of Delta variant infection.

methodsVirus shedding, organ viral load, lung disease and immune response generated in hamsters were sequentially assessed.

findingsThe disease characteristics of the Omicron (R346K) variant were found to be similar to that of the Delta variant infection in hamsters like viral replication in the respiratory tract and interstitial pneumonia. The Omicron (R346K) infected hamsters demonstrated lesser body weight reduction and viral RNA load in the throat swab and nasal wash samples in comparison to the Delta variant infection. The viral load in the lungs and nasal turbinate samples and the lung disease severity of the Omicron (R346K) infected hamsters were found comparable with that of the Delta variant infected hamsters. Neutralizing antibody response against Omicron (R346K) variant was detected from day 5 and the cross-neutralization titre of the sera against other variants showed severe reduction ie., 7 fold reduction against Alpha and no titers against B.1, Beta and Delta.

interpretationThis preliminary data shows that Omicron (R346K) variant infection can produce moderate to severe lung disease similar to that of the Delta variant and the neutralizing antibodies produced in response to Omicron (R346K) variant infection shows poor neutralizing ability against other co-circulating SARS-CoV-2 variants like Delta which necessitates caution as it may lead to increased cases of reinfection.

fundingThis study was supported by Indian Council of Medical Research as an intramural grant (COVID-19) to ICMR-National Institute of Virology, Pune.

Indexed as

COVID-19SARS-CoV-2AnimalsAntibodies, NeutralizingCricetinaeHumansIndiaMesocricetusVirulenceAntibodies, NeutralizingBA.1.1NeutralizationOmicron (R346K)PathogenicityR346KSARS-CoV-2Syrian hamsters

Identifiers

PMID35405385
PMCPMC8993158
OpenAlexW4223572329

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.