Evidence map›Paper›PMID 35405098›Full record

ArticleThe Journal of biological chemistry2022

CPR-C4 is a highly conserved novel protease from the Candidate Phyla Radiation with remote structural homology to human vasohibins.

Katy A S Cornish, Joanna Lange, Arnthór Aevarsson, Ehmke Pohl

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

Katy A S CornishDepartment of Chemistry, Durham University, Lower Mountjoy, Durham, County Durham, United Kingdom.
Joanna LangeBio-Prodict, Nijmegen, The Netherlands.
Arnthór AevarssonMatis ohf, Reykjavik, Iceland.
Ehmke PohlDepartment of Chemistry, Durham University, Lower Mountjoy, Durham, County Durham, United Kingdom; Department of Biosciences, Durham University, Upper Mountjoy, Durham, County Durham, United Kingdom. Electronic address: ehmke.pohl@durham.ac.uk.
Durham University · GBBio-Prodict (Netherlands) · NLMatís (Iceland) · IS

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Candidate Phyla Radiation is a recently uncovered and vast expansion of the bacterial domain of life, made up of largely uncharacterized phyla that lack isolated representatives. This unexplored territory of genetic diversity presents an abundance of novel proteins with potential applications in the life-science sectors. Here, we present the structural and functional elucidation of CPR-C4, a hypothetical protein from the genome of a thermophilic Candidate Phyla Radiation organism, identified through metagenomic sequencing. Our analyses revealed that CPR-C4 is a member of a family of highly conserved proteins within the Candidate Phyla Radiation. The function of CPR-C4 as a cysteine protease was predicted through remote structural similarity to the Homo sapiens vasohibins and subsequently confirmed experimentally with fluorescence-based activity assays. Furthermore, detailed structural and sequence alignment analysis enabled identification of a noncanonical cysteine-histidine-leucine(carbonyl) catalytic triad. The unexpected structural and functional similarities between CPR-C4 and the human vasohibins suggest an evolutionary relationship undetectable at the sequence level alone.

Indexed as

BacteriaPeptide HydrolasesBacterial ProteinsCell Cycle ProteinsConserved SequenceHumansMetagenomeMetagenomicsPhylogenyProtein Structure, TertiaryBacterial ProteinsCell Cycle ProteinsPeptide HydrolasesVASH1 protein, humanCandidate Phyla Radiationcysteine proteasemetagenomicsprotein crystallizationprotein evolutionstructural biologystructure-functionthermophileX-ray crystallographyzinc

Identifiers

PMID35405098
PMCPMC9108980
OpenAlexW4223448368

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.