Evidence map›Paper›PMID 35404441›Full record

ArticleCancer discovery2022

The Spatial Landscape of Progression and Immunoediting in Primary Melanoma at Single-Cell Resolution.

Ajit J Nirmal, Zoltan Maliga, Tuulia Vallius, Brian Quattrochi, Alyce A Chen, Connor A Jacobson, Roxanne J Pelletier, Clarence Yapp, Raquel Arias-Camison, Yu-An Chen and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer discovery, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 158 papers.

0numbers the graph read from it
0cells of the map it votes in
158citing papers in PubMed
52.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

158 citing papers in PubMed, 207 citations in OpenAlex.

  1. Trial
  2. Review
  3. Review
  4. Melanoma evolution in the lymph node shapes systemic outcomes.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Spatial architecture of development and disease.Nature reviews. Genetics · 2026
    Review
  15. Review
  16. Article
  17. Review
  18. SEAL: Spatially-resolved Embedding Analysis with Linked Imaging Data.IEEE transactions on visualization and computer graphics · 2026
    Article
  19. Article
  20. Article

98 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Ajit J Nirmal *Laboratory of Systems Pharmacology, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0003-4139-0618
Zoltan Maliga *Laboratory of Systems Pharmacology, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0003-4209-7253
Tuulia Vallius *Laboratory of Systems Pharmacology, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0002-3006-4887
Brian QuattrochiDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts.
Alyce A ChenLaboratory of Systems Pharmacology, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0002-5018-8908
Connor A JacobsonLaboratory of Systems Pharmacology, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0002-0299-3451
Roxanne J PelletierLaboratory of Systems Pharmacology, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0002-1957-5483
Clarence YappLaboratory of Systems Pharmacology, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0003-1144-5710
Raquel Arias-CamisonLaboratory of Systems Pharmacology, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0002-9486-7419
Yu-An ChenLaboratory of Systems Pharmacology, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0001-7228-4696
Christine G LianDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0003-4626-1612
George F MurphyDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts.
Sandro Santagata *Laboratory of Systems Pharmacology, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0002-7528-9668
Peter K Sorger *Laboratory of Systems Pharmacology, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0002-3364-1838
Harvard University · USBrigham and Women's Hospital · US

Funding

VectorP30CA006516 · NCI · DANA-FARBER CANCER INSTITUTE · PI JENNIFER W MACK · 1985 to 2026
$330.6M
Pre-cancer atlases of cutaneous and hematologic origin (PATCH Center)U2CCA233262 · NCI · HARVARD MEDICAL SCHOOL · PI SANTAGATA, SANDRO · 2018 to 2023
$8.7M
Super-Resolution ImagingP30NS072030 · NINDS · HARVARD MEDICAL SCHOOL · PI REGEHR, WADE G · 2011 to 2020
$5.8M
High dimensional digital pathology to investigate the tumor micro environment and its impact on response to therapyR50CA252138 · NCI · HARVARD MEDICAL SCHOOL · PI MALIGA, ZOLTAN · 2020 to 2024
$1.0M
Integrative Prediction of Therapeutic Response in T-cell Lymphoma by Omic and Spatial ModelingK99CA256497 · NCI · DANA-FARBER CANCER INST · PI NIRMAL, AJIT JOHNSON · 2021 to 2022
$272k
NCI NIH HHS K99 CA256497NCI NIH HHS P30 CA006516NCI NIH HHS R50 CA252138NCI NIH HHS U2C CA233262NINDS NIH HHS P30 NS072030
6 · The paper itself

Abstract

Cutaneous melanoma is a highly immunogenic malignancy that is surgically curable at early stages but life-threatening when metastatic. Here we integrate high-plex imaging, 3D high-resolution microscopy, and spatially resolved microregion transcriptomics to study immune evasion and immunoediting in primary melanoma. We find that recurrent cellular neighborhoods involving tumor, immune, and stromal cells change significantly along a progression axis involving precursor states, melanoma in situ, and invasive tumor. Hallmarks of immunosuppression are already detectable in precursor regions. When tumors become locally invasive, a consolidated and spatially restricted suppressive environment forms along the tumor-stromal boundary. This environment is established by cytokine gradients that promote expression of MHC-II and IDO1, and by PD1-PDL1-mediated cell contacts involving macrophages, dendritic cells, and T cells. A few millimeters away, cytotoxic T cells synapse with melanoma cells in fields of tumor regression. Thus, invasion and immunoediting can coexist within a few millimeters of each other in a single specimen. SIGNIFICANCE: The reorganization of the tumor ecosystem in primary melanoma is an excellent setting in which to study immunoediting and immune evasion. Guided by classic histopathology, spatial profiling of proteins and mRNA reveals recurrent morphologic and molecular features of tumor evolution that involve localized paracrine cytokine signaling and direct cell-cell contact. This article is highlighted in the In This Issue feature, p. 1397.

Indexed as

MelanomaSkin NeoplasmsCutaneous Malignant MelanomaCytokinesEcosystemHumansCytokines

Identifiers

PMID35404441
PMCPMC9167783
OpenAlexW4225563096

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.