Evidence map›Paper›PMID 35400102›Full record

ArticleFrontiers in veterinary science2022

Measuring How Recombination Re-shapes the Evolutionary History of PRRSV-2: A Genome-Based Phylodynamic Analysis of the Emergence of a Novel PRRSV-2 Variant.

Nakarin Pamornchainavakul, Mariana Kikuti, Igor A D Paploski, Dennis N Makau, Albert Rovira, Cesar A Corzo, Kimberly VanderWaal

Abstract read
In one paragraph

Article in Frontiers in veterinary science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Nakarin PamornchainavakulDepartment of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN, United States.
Mariana KikutiDepartment of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN, United States.
Igor A D PaploskiDepartment of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN, United States.
Dennis N MakauDepartment of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN, United States.
Albert RoviraDepartment of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN, United States.
Cesar A CorzoDepartment of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN, United States.
Kimberly VanderWaalDepartment of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While the widespread and endemic circulation of porcine reproductive and respiratory syndrome virus type 2 (PRRSV-2) causes persistent economic losses to the U.S. swine industry, unusual increases of severe cases associated with the emergence of new genetic variants are a major source of concern for pork producers. Between 2020 and 2021, such an event occurred across pig production sites in the Midwestern U.S. The emerging viral clade is referred to as the novel sub-lineage 1C (L1C) 1-4-4 variant. This genetic classification is based on the open reading frame 5 (ORF5) gene. However, although whole genome sequence (WGS) suggested that this variant represented the emergence of a new strain, the true evolutionary history of this variant remains unclear. To better elucidate the variant's evolutionary history, we conducted a recombination detection analysis, time-scaled phylogenetic estimation, and discrete trait analysis on a set of L1C-1-4-4 WGSs (

Indexed as

epidemicsporcine reproductive and respiratory syndrome virus 2variant emergenceviral recombinationwhole genome sequencing

Identifiers

PMID35400102
PMCPMC8990846

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.