Evidence map›Paper›PMID 35399495›Full record

ArticleFunction (Oxford, England)2022

An In Vivo Stable Isotope Labeling Method to Investigate Individual Matrix Protein Synthesis, Ribosomal Biogenesis, and Cellular Proliferation in Murine Articular Cartilage.

Kamil A Kobak, Albert Batushansky, Agnieszka K Borowik, Erika Prado Barboza Lopes, Frederick F Peelor Iii, Elise L Donovan, Michael T Kinter, Benjamin F Miller, Timothy M Griffin

Open access · goldAbstract read
In one paragraph

Article in Function (Oxford, England), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 14 citations in OpenAlex.

  1. Metabolic profiling of Escherichia coli under deuterium oxide-induced stress.Metabolomics : Official journal of the Metabolomic Society · 2026
    Article
  2. Review
  3. Urinary metabolome dynamics inMetabolomics : Official journal of the Metabolomic Society · 2025
    Article
  4. Article
  5. Inhibition of mTORC1 by rapamycin results in feedback activation of AktbioRxiv : the preprint server for biology · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Kamil A KobakAging and Metabolism Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, 73104, USA.ORCID 0000-0003-1804-6333
Albert BatushanskyAging and Metabolism Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, 73104, USA.
Agnieszka K BorowikAging and Metabolism Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, 73104, USA.
Erika Prado Barboza LopesAging and Metabolism Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, 73104, USA.
Frederick F Peelor IiiAging and Metabolism Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, 73104, USA.
Elise L DonovanAging and Metabolism Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, 73104, USA.
Michael T KinterAging and Metabolism Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, 73104, USA.
Benjamin F MillerAging and Metabolism Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, 73104, USA.ORCID 0000-0003-3283-0685
Timothy M GriffinAging and Metabolism Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, 73104, USA.ORCID 0000-0001-8840-9940
Oklahoma Medical Research Foundation · USVeterans Health Administration · US

Funding

Viral sensor IFIH1 promotes SLE through an altered interferon programP20GM139763 · NIGMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI RUFEI LU · 2021 to 2026
$20.3M
Targeted DNA Methylation and Mitochondrial Heteroplasmy CoreP30AG050911 · NIA · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI William Edmund Sonntag · 2015 to 2026
$13.9M
Pilot ProjectP30GM114731 · NIGMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI MCEVER, RODGER PAUL · 2016 to 2020
$6.5M
Chondrocyte Metabolic Stress in the Development of OsteoarthritisR01AG049058 · NIA · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GRIFFIN, TIMOTHY M · 2015 to 2019
$1.9M
A novel approach to understand a mechanism of proteostatic decline with agingR56AG067754 · NIA · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI MILLER, BENJAMIN FRANCIS · 2020 to 2020
$768k
CMA: Cartilage Repair Strategies to Alleviate Arthritic Pain (CaRe AP): Optimizing the Host Environment for Intra-articular Osteoarthritis TherapiesI01BX004882 · VA · OKLAHOMA CITY VA MEDICAL CENTER · PI GRIFFIN, TIMOTHY M, JEFFRIES, MATLOCK · 2020 to 2025
–
Targeting Molecular Transducers of Exercise for Osteoarthritis TherapiesI01BX004666 · VA · OKLAHOMA CITY VA MEDICAL CENTER · PI GRIFFIN, TIMOTHY M · 2020 to 2023
–
BLRD VA I01 BX004666BLRD VA I01 BX004882BLRD VA I01 BX005592NIA NIH HHS P30 AG050911NIA NIH HHS R01 AG049058NIA NIH HHS R56 AG067754NIGMS NIH HHS P20 GM139763NIGMS NIH HHS P30 GM114731
6 · The paper itself

Abstract

Targeting chondrocyte dynamics is a strategy for slowing osteoarthritis progression during aging. We describe a stable-isotope method using in vivo deuterium oxide labeling and mass spectrometry to measure protein concentration, protein half-life, cell proliferation, and ribosomal biogenesis in a single sample of murine articular cartilage. We hypothesized that a 60-d labeling period would capture age-related declines in cartilage matrix protein content, protein synthesis rates, and cellular proliferation. Knee cartilage was harvested to the subchondral bone from 25- to 90-wk-old female C57BL/6J mice treated with deuterium oxide for 15, 30, 45, and 60 d. We measured protein concentration and half-lives using targeted high resolution accurate mass spectrometry and d2ome data processing software. Deuterium enrichment was quantified in isolated DNA and RNA to measure cell proliferation and ribosomal biogenesis, respectively. Most collagen isoforms were less abundant in aged animals, with negligible collagen synthesis at either age. In contrast, age altered the concentration and half-lives of many proteoglycans and other matrix proteins, including several with greater concentration and half-lives in older mice such as proteoglycan 4, clusterin, and fibronectin-1. Cellular proteins were less abundant in older animals, consistent with reduced cellularity. Nevertheless, deuterium was maximally incorporated into 60% of DNA and RNA by 15 d of labeling in both age groups, suggesting the presence of two large pools of either rapidly (<15 d) or slowly (>60 d) proliferating cells. Our findings indicate that age-associated changes in cartilage matrix protein content and synthesis occur without detectable changes in the relative number of proliferating cells.

Indexed as

Cartilage, ArticularAnimalsCell ProliferationCollagenDeuteriumDeuterium OxideDNAFemaleIsotope LabelingMatrilin ProteinsMiceMice, Inbred C57BLProtein BiosynthesisRNACollagenDeuteriumDeuterium OxideDNAMatrilin ProteinsRNAcartilage protein synthesiscellular turnoverchondrocyte proliferationdeuterium labelingextracellular matrix turnover

Identifiers

PMID35399495
PMCPMC8991031
OpenAlexW4214567547

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.