Evidence map›Paper›PMID 35397749›Full record

ArticleJournal of biomolecular NMR2022

Ligand-induced structural transitions combined with paramagnetic ions facilitate unambiguous NMR assignments of methyl groups in large proteins.

Lars Mühlberg, Tuncay Alarcin, Thorben Maass, Robert Creutznacher, Richard Küchler, Alvaro Mallagaray

Open access · hybridAbstract read
In one paragraph

Article in Journal of biomolecular NMR, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. AMIGO - Guided assignment ofJournal of biomolecular NMR · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Lars MühlbergInstitute for Chemistry and Metabolomics, Centre for Structural and Cell Biology in Medicine, University of Lübeck, Ratzeburger Allee 160, 23562, Lübeck, Germany.
Tuncay AlarcinInstitute for Chemistry and Metabolomics, Centre for Structural and Cell Biology in Medicine, University of Lübeck, Ratzeburger Allee 160, 23562, Lübeck, Germany.
Thorben MaassInstitute for Chemistry and Metabolomics, Centre for Structural and Cell Biology in Medicine, University of Lübeck, Ratzeburger Allee 160, 23562, Lübeck, Germany.
Robert CreutznacherInstitute for Chemistry and Metabolomics, Centre for Structural and Cell Biology in Medicine, University of Lübeck, Ratzeburger Allee 160, 23562, Lübeck, Germany.
Richard KüchlerInstitute for Chemistry and Metabolomics, Centre for Structural and Cell Biology in Medicine, University of Lübeck, Ratzeburger Allee 160, 23562, Lübeck, Germany.
Alvaro MallagarayInstitute for Chemistry and Metabolomics, Centre for Structural and Cell Biology in Medicine, University of Lübeck, Ratzeburger Allee 160, 23562, Lübeck, Germany. alvaro.mallagaraydebenito@uni-luebeck.de.ORCID http://orcid.org/0000-0001-5825-4407
University of Lübeck · DE

Funding

European Fonds for Regional Development LPW-E/1.1.2/857iNEXT program PID 7367
6 · The paper itself

Abstract

NMR spectroscopy allows the study of biomolecules in close-to-native conditions. Structural information can be inferred from the NMR spectra when an assignment is available. Protein assignment is usually a time-consuming task, being specially challenging in the case of large, supramolecular systems. Here, we present an extension of existing state-of-the-art strategies for methyl group assignment that partially overcomes signal overlapping and other difficulties associated to isolated methyl groups. Our approach exploits the ability of proteins to populate two or more conformational states, allowing for unique NOE restraints in each protein conformer. The method is compatible with automated assignment algorithms, granting assignments beyond the limits of a single protein state. The approach also benefits from long-range structural restraints obtained from metal-induced pseudocontact shifts (PCS) and paramagnetic relaxation enhancements (PREs). We illustrate the method with the complete assignment of the 199 methyl groups of a MIL

Indexed as

GlucoseProteinsHumansIonsLigandsMagnetic Resonance SpectroscopyNuclear Magnetic Resonance, BiomolecularGlucoseIonsLigandsProteins4D HMQC-NOESY-HMQCComplete assignmentMethyl-TROSYMILVAT labellingParamagnetic NMRUDP-glucose pyrophosphorylase from Leishmania major

Identifiers

PMID35397749
PMCPMC9247001
OpenAlexW4223419374

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.