Evidence map›Paper›PMID 35396956›Full record

ArticleApplied microbiology and biotechnology2022

Significance of both alkB and P450 alkane-degrading systems in Tsukamurella tyrosinosolvens: proteomic evidence.

Valeriya Romanova, Maria Markelova, Eugenia Boulygina, Maria Siniagina, Rudolf Müller, Tatiana Grigoryeva, Alexander Laikov

Abstract read
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In one paragraph

Article in Applied microbiology and biotechnology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 55% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Functional Analysis of NovelMicroorganisms · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Valeriya RomanovaInstitute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia.
Maria MarkelovaInstitute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia.
Eugenia BoulyginaInstitute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia.
Maria SiniaginaInstitute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia.
Rudolf MüllerInstitute of Technical Biocatalysis, Hamburg University of Technology, Hamburg, Germany.
Tatiana GrigoryevaInstitute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia.
Alexander LaikovInstitute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia. AVLajkov@kpfu.ru.ORCID http://orcid.org/0000-0002-4250-2645
Kazan Federal University · RUUniversität Hamburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Tsukamurella tyrosinosolvens PS2 strain was isolated from hydrocarbons-contaminated petrochemical sludge as a long chain alkane-utilizing bacteria. Complete genome analysis showed the presence of two alkane oxidation systems: alkane 1-monooxygenase (alkB) and cytochrome P450 monooxygenase (P450) genes with established high homology to the well-known alkane-degrading actinobacteria. According to the comparative genome analysis, both systems have a wide distribution among environmental and clinical isolates of the genus Tsukamurella and other members of Actinobacteria. We compared the expression of different proteins during the growth of Tsukamurella on sucrose and on hexadecane. Both alkane monooxygenases were upregulated on hexadecane: AlkB-up to 2.5 times, P450-up to 276 times. All proteins of the hexadecane oxidation pathway to acetyl-CoA were also upregulated. Accompanying proteins for alkane degradation involved in biosurfactant synthesis and transport of organic and inorganic molecules were increased. The change in the carbon source affected the pathways for the regulation of translation and transcription. The proteomic profile showed that hexadecane is an adverse factor causing activation of general and universal stress proteins as well as shock and resistance proteins. Differently expressed proteins of Tsukamurella tyrosinosolvens PS2 shed light on the alkane degradation in other members of Actinobacteria class. KEY POINTS: • alkB and P450 systems have a wide distribution among the genus Tsukamurella. • alkB and P450 systems have coexpression with the predominant role of P450 protein. • Hexadecane causes significant changes in bacterial proteome.

Indexed as

ActinomycetalesProteomicsActinobacteriaAlkanesBacteriaBiodegradation, EnvironmentalCytochrome P-450 CYP4AAlkanesCytochrome P-450 CYP4AAlkane degradationAlkane hydroxylasealkBP450Quantitative proteomicsTsukamurella tyrosinosolvens

Identifiers

PMID35396956
OpenAlexW4223562238

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.