Evidence map›Paper›PMID 35394828›Full record

ArticleScience advances2022

Translational recoding by chemical modification of non-AUG start codon ribonucleotide bases.

Yoshihiko Fujita, Takeru Kameda, Chingakham Ranjit Singh, Whitney Pepper, Ariana Cecil, Madelyn Hilgers, Mackenzie Thornton, Izumi Asano, Carter Moravek, Yuichi Togashi and 2 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Yoshihiko FujitaCenter for iPS Cell Research and Application, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan.ORCID 0000-0001-6321-2121
Takeru KamedaGraduate School of Science, Hiroshima University, Higashi-Hiroshima, Hiroshima 739-0046, Japan.ORCID 0000-0002-7621-4289
Chingakham Ranjit SinghMolecular Cellular and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, KS 66506, USA.ORCID 0000-0003-2840-3066
Whitney PepperMolecular Cellular and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, KS 66506, USA.
Ariana CecilMolecular Cellular and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, KS 66506, USA.
Madelyn HilgersMolecular Cellular and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, KS 66506, USA.ORCID 0000-0001-5695-1508
Mackenzie ThorntonMolecular Cellular and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, KS 66506, USA.
Izumi AsanoMolecular Cellular and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, KS 66506, USA.
Carter MoravekMolecular Cellular and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, KS 66506, USA.
Yuichi TogashiCollege of Life Sciences, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan.ORCID 0000-0003-0032-2424
Hirohide SaitoCenter for iPS Cell Research and Application, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan.ORCID 0000-0002-8570-5784
Katsura AsanoMolecular Cellular and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, KS 66506, USA.ORCID 0000-0002-8636-0263
Kansas State University · USHiroshima University · JPKyoto University · JP

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SUSAN J. BROWN · 2012 to 2026
$63.0M
Studies on start codon selection by eukaryotic ribosomesR01GM064781 · NIGMS · KANSAS STATE UNIVERSITY · PI ASANO, KATSURA · 2002 to 2010
$2.4M
Mechanism of stringent translation initiation: a probe for its biological relevanceR01GM147542 · NIGMS · KANSAS STATE UNIVERSITY · PI KATSURA ASANO · 2023 to 2026
$1.2M
The role of translational control in metabolic stress responseR15GM124671 · NIGMS · KANSAS STATE UNIVERSITY · PI ASANO, KATSURA · 2017 to 2020
$899k
NIGMS NIH HHS P20 GM103418NIGMS NIH HHS R01 GM064781NIGMS NIH HHS R01 GM147542NIGMS NIH HHS R15 GM124671
6 · The paper itself

Abstract

In contrast to prokaryotes wherein GUG and UUG are permissive start codons, initiation frequencies from non-AUG codons are generally low in eukaryotes, with CUG being considered as strongest. Here, we report that combined 5-cytosine methylation (5mC) and pseudouridylation (Ψ) of near-cognate non-AUG start codons convert GUG and UUG initiation strongly favored over CUG initiation in eukaryotic translation under a certain context. This prokaryotic-like preference is attributed to enhanced NUG initiation by Ψ in the second base and reduced CUG initiation by 5mC in the first base. Molecular dynamics simulation analysis of tRNA

Identifiers

PMID35394828
PMCPMC11706245
OpenAlexW4223546063

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.