Evidence map›Paper›PMID 35393744›Full record

ArticleIntegrated environmental assessment and management2023

Leveraging ToxCast data and protein sequence conservation to complement aquatic life criteria derivation.

Christopher M Schaupp, Carlie A LaLone, Brett R Blackwell, Gerald T Ankley, Daniel L Villeneuve

Abstract read
In one paragraph

Article in Integrated environmental assessment and management, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Christopher M SchauppOak Ridge Institute for Science and Education, USEPA, Great Lakes Toxicology and Ecology Division, Duluth, Minnesota, USA.ORCID http://orcid.org/0000-0002-7792-3861
Carlie A LaLoneUSEPA, Great Lakes Toxicology and Ecology Division, Duluth, Minnesota, USA.ORCID https://orcid.org/0000-0003-3174-1314
Brett R BlackwellUSEPA, Great Lakes Toxicology and Ecology Division, Duluth, Minnesota, USA.ORCID https://orcid.org/0000-0003-1296-4539
Gerald T AnkleyUSEPA, Great Lakes Toxicology and Ecology Division, Duluth, Minnesota, USA.ORCID https://orcid.org/0000-0002-9937-615X
Daniel L VilleneuveUSEPA, Great Lakes Toxicology and Ecology Division, Duluth, Minnesota, USA.ORCID https://orcid.org/0000-0003-2801-0203

Funding

Intramural EPA EPA999999
6 · The paper itself

Abstract

The USEPA's 1985 guidelines for the derivation of aquatic life criteria (ALC) are robust but data-intensive. For many chemicals, the extensive in vivo data sets required for ALC derivation are not available. Thus, alternative analyses and processes that can provide provisional values to guide states, tribes, and other stakeholders while data accumulate and more rigorous criteria are derived would be beneficial. The overarching purpose of this study was to assess the feasibility of using data from new approach methodologies (NAMs) like ToxCast to derive first-pass, provisional values to guide chemical prioritization and resource management as a complement to traditional ALC derivation. To address this goal, the study objectives were to (1) estimate chemical potency using data from NAMs for nine compounds with available aquatic benchmarks, (2) evaluate the utility of using NAM data to elucidate potential mechanisms of toxicity to guide problem formulation, and (3) determine the species relevance of toxicity pathways for compounds with clearly defined mechanisms of action as a means to evaluate whether minimum data requirements could potentially be waived when deriving a more formal ALC. Points of departure were derived from ToxCast data based on the fifth percentile of the distribution of activity concentration above cutoff values falling below the cytotoxic burst. Mechanistic inferences were made based on active target hits in ToxCast and, where applicable, assessed for taxonomic conservation using SeqAPASS. ToxCast-based point-of-departure aligned relatively closely (six of nine test chemicals within a factor of 10; eight of nine within a factor of 100) with aquatic benchmarks from the USEPA and US Department of Energy (DOE). Moreover, pathways of toxicity gleaned from NAM data were reflective of in vivo-based findings from the literature. These results, while preliminary, and based on a limited number of substances, support the potential application of NAM data to complement traditional ALC derivation approaches and prioritization. Integr Environ Assess Manag 2023;19:224-238. © 2022 Society of Environmental Toxicology & Chemistry (SETAC). This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA.

Indexed as

EcotoxicologyHumansAquatic life criteriaComputational toxicologyNew approach methodologiesRisk assessmentToxicology

Identifiers

PMID35393744
PMCPMC10618725

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.