Evidence map›Paper›PMID 35393575›Full record

ArticleNature chemical biology2022

The biosynthetic origin of ribofuranose in bacterial polysaccharides.

Steven D Kelly, Danielle M Williams, Jeremy T Nothof, Taeok Kim, Todd L Lowary, Matthew S Kimber, Chris Whitfield

Abstract read
PubMed Publisher
In one paragraph

Article in Nature chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. O-antigen polysaccharides inMicrobiology and molecular biology reviews : MMBR · 2025
    Review
  4. Article
  5. Article
  6. Article
  7. Automated Synthesis of Algal Fucoidan Oligosaccharides.Journal of the American Chemical Society · 2024
    Article
  8. Article
  9. More than one way to add a sugar into bacterial polysaccharides.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Three-component systems represent a common pathway for extracytoplasmic addition of pentofuranose sugars into bacterial glycans.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Steven D KellyDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.ORCID http://orcid.org/0000-0003-1250-7055
Danielle M WilliamsDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.ORCID http://orcid.org/0000-0003-1692-9554
Jeremy T NothofDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Taeok KimDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.ORCID http://orcid.org/0000-0002-4985-1186
Todd L LowaryDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Matthew S KimberDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada. mkimber@uoguelph.ca.ORCID http://orcid.org/0000-0001-9454-5586
Chris WhitfieldDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada. cwhitfie@uoguelph.ca.ORCID http://orcid.org/0000-0002-5267-7027
University of Guelph · CAUniversity of Alberta · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial surface polysaccharides are assembled by glycosyltransferase enzymes that typically use sugar nucleotide or polyprenyl-monophosphosugar activated donors. Characterized representatives exist for many monosaccharides but neither the donor nor the corresponding glycosyltransferases have been definitively identified for ribofuranose residues found in some polysaccharides. Klebsiella pneumoniae O-antigen polysaccharides provided prototypes to identify dual-domain ribofuranosyltransferase proteins catalyzing a two-step reaction sequence. Phosphoribosyl-5-phospho-D-ribosyl-α-1-diphosphate serves as the donor for a glycan acceptor-specific phosphoribosyl transferase (gPRT), and a more promiscuous phosphoribosyl-phosphatase (PRP) then removes the residual 5'-phosphate. The 2.5-Å resolution crystal structure of a dual-domain ribofuranosyltransferase ortholog from Thermobacillus composti revealed a PRP domain that conserves many features of the phosphatase members of the haloacid dehalogenase family, and a gPRT domain that diverges substantially from all previously characterized phosphoribosyl transferases. The gPRT represents a new glycosyltransferase fold conserved in the most abundant ribofuranosyltransferase family.

Indexed as

GlycosyltransferasesPolysaccharides, BacterialBacterial ProteinsKlebsiella pneumoniaeO AntigensPhosphoric Monoester HydrolasesPolysaccharidesBacterial ProteinsGlycosyltransferasesO AntigensPhosphoric Monoester HydrolasesPolysaccharidesPolysaccharides, Bacterial

Identifiers

PMID35393575
OpenAlexW4224243767

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.