Evidence map›Paper›PMID 35393561›Full record

ArticleNature biotechnology2022

Fludarabine increases nuclease-free AAV- and CRISPR/Cas9-mediated homologous recombination in mice.

Shinnosuke Tsuji, Calvin J Stephens, Giulia Bortolussi, Feijie Zhang, Gabriele Baj, Hagoon Jang, Gustavo de Alencastro, Andrés F Muro, Katja Pekrun, Mark A Kay

Open access · bronzeAbstract read
In one paragraph

Article in Nature biotechnology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Genome engineering with Cas9 and AAV repair templates, successes and pitfalls.Mammalian genome : official journal of the International Mammalian Genome Society · 2025
    Review
  4. Article
  5. AAV-mediated genome editing is influenced by the formation of R-loops.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  6. R-loops facilitate AAV-mediated nuclease-free gene targeting.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  7. Gene Therapy for Inherited Liver Disease: To Add or to Edit.International journal of molecular sciences · 2024
    Review
  8. AAV-mediated genome editing is influenced by the formation of R-loops.bioRxiv : the preprint server for biology · 2024
    Article
  9. Frontiers in genome editing · 2024
    Review
  10. Article
  11. Article
  12. A promoterless AAV6.2FF-based lung gene editing platform for the correction of surfactant protein B deficiency.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. CRISPR/Cas systems: Delivery and application in gene therapy.Frontiers in bioengineering and biotechnology · 2022
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Shinnosuke Tsuji *Departments of Pediatrics and Genetics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-1929-4956
Calvin J Stephens *Departments of Pediatrics and Genetics, Stanford University, Stanford, CA, USA.
Giulia BortolussiInternational Centre for Genetic Engineering and Biotechnology (ICGEB), Trieste, Italy.
Feijie ZhangDepartments of Pediatrics and Genetics, Stanford University, Stanford, CA, USA.
Gabriele BajLight Microscopy Imaging Center, Department of Life Sciences, University of Trieste, Trieste, Italy.ORCID http://orcid.org/0000-0002-2625-9454
Hagoon JangDepartments of Pediatrics and Genetics, Stanford University, Stanford, CA, USA.
Gustavo de AlencastroDepartments of Pediatrics and Genetics, Stanford University, Stanford, CA, USA.
Andrés F MuroInternational Centre for Genetic Engineering and Biotechnology (ICGEB), Trieste, Italy.ORCID http://orcid.org/0000-0002-9628-0494
Katja PekrunDepartments of Pediatrics and Genetics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-8346-1889
Mark A KayDepartments of Pediatrics and Genetics, Stanford University, Stanford, CA, USA. markay@stanford.edu.ORCID http://orcid.org/0000-0002-2799-2615
Pediatrics and Genetics · USInternational Centre for Genetic Engineering and Biotechnology · ITStanford Medicine · USUniversity of Trieste · IT

Funding

HEPATIC GENE TRANSFER FOR TREATMENT OF HEMOPHILIAS A &BR01HL064274 · NHLBI · STANFORD UNIVERSITY · PI Mark A Kay · 2000 to 2026
$13.6M
Training in Pediatric Nonmalignant Hematology and Stem Cell BiologyT32DK098132 · NIDDK · STANFORD UNIVERSITY · PI SAKAMOTO, KATHLEEN M · 2014 to 2022
$1.9M
NHLBI NIH HHS R01 HL064274NIDDK NIH HHS T32 DK098132
6 · The paper itself

Abstract

Homologous recombination (HR)-based gene therapy using adeno-associated viruses (AAV-HR) without nucleases has several advantages over classic gene therapy, especially the potential for permanent transgene expression. However, the low efficiency of AAV-HR remains a major limitation. Here, we tested a series of small-molecule compounds and found that ribonucleotide reductase (RNR) inhibitors substantially enhance AAV-HR efficiency in mouse and human liver cell lines approximately threefold. Short-term administration of the RNR inhibitor fludarabine increased the in vivo efficiency of both non-nuclease- and CRISPR/Cas9-mediated AAV-HR two- to sevenfold in the murine liver, without causing overt toxicity. Fludarabine administration induced transient DNA damage signaling in both proliferating and quiescent hepatocytes. Notably, the majority of AAV-HR events occurred in non-proliferating hepatocytes in both fludarabine-treated and control mice, suggesting that the induction of transient DNA repair signaling in non-dividing hepatocytes was responsible for enhancing AAV-HR efficiency in mice. These results suggest that use of a clinically approved RNR inhibitor can potentiate AAV-HR-based genome-editing therapeutics.

Indexed as

CRISPR-Cas SystemsGenetic VectorsAnimalsDependovirusEndonucleasesGene EditingHomologous RecombinationHumansMiceVidarabineEndonucleasesfludarabineVidarabine

Identifiers

PMID35393561
PMCPMC11648996
OpenAlexW4226401205

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.