Evidence map›Paper›PMID 35393127›Full record

ArticleIndian journal of medical microbiology

Effect of delay in processing and storage temperature on diagnosis of SARS-CoV-2 by RTPCR testing.

Srikar Anagoni, Nagaraja Mudhigeti, Mohan Alladi, Verma Anju, Padmalatha Am, Usha Kalawat

Abstract read
In one paragraph

Article in Indian journal of medical microbiology. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Srikar AnagoniDepartment of Microbiology, Sri Venkateswara Institute of Medical Sciences, Tirupati, India. Electronic address: srikar1001@gmail.com.
Nagaraja MudhigetiState Level Virology Laboratory, Sri Venkateswara Institute of Medical Sciences, Tirupati, India. Electronic address: nagarajamudhigeti@gmail.com.
Mohan AlladiDepartment of Medicine, Sri Venkateswara Institute of Medical Sciences, Tirupati, India. Electronic address: alladimohan@yahoo.com.
Verma AnjuDepartment of Microbiology, Sri Venkateswara Institute of Medical Sciences, Tirupati, India. Electronic address: anju_verma@rocketmail.com.
Padmalatha AmState Level Virology Laboratory, Sri Venkateswara Institute of Medical Sciences, Tirupati, India. Electronic address: drampadmalatha@gmail.com.
Usha KalawatDepartment of Clinical Virology, Sri Venkateswara Institute of Medical Sciences, 517501, Tirupati, Andhra Pradesh, India. Electronic address: ukalawat@yahoo.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeA large number of new molecular or virology laboratories have been established to increase the testing capacity for SARS-CoV-2. Due to heavy workload, there is delay in testing of samples. In order to avoid the negative effect of delayed testing on RTPCR results guidelines are issued from WHO and CDC to transport samples in cold chain. However, in pandemic situations the recommended guidelines for transport and storage conditions are often compromised. This study was conducted to evaluate the effect of sample storage conditions at different temperatures on the results of RT PCR test.

methodsTotal 275 samples were included in this study, among these 126 samples tested positive and 149 samples tested negative. All samples were aliquoted into two and the aliquotes stored in duplicate at 4 ​°C and room temperature. All aliquots stored at both the temperatures were tested by RTPCR every 24 hours up to 5 days.

resultsDiagnostic accuracy decreased from day1 to day 5 at both the storage temperatures i,e 4 ​°C and room temperature in comparison to the initial day results. Positivity decreased on an average of 9.02% at 4 ​°C and at 9.27% at room temperature per day. Among total 126 positive samples on an average false negative and failure of internal control at 4 ​°C and room temperature was 8.86%, 8.22% and 3.64%, and 4.12%, respectively. All the samples with CT value ​< ​30 remained positive at both temperatures up to 5 days. Few samples with >30 CT value showed variable results i.e. positive, negative or internal control failure from day 1 (2nd day after sample collection) onwards.

conclusionsThere was no significant difference between RT PCR results of samples stored at 4 ​°C and room temperature up to 5 days of collection. However internal control failure was more in samples stored at room temperature. Therefore, samples received without cold chain also may be processed by RTPCR and should not be rejected.

Indexed as

COVID-19SARS-CoV-2COVID-19 TestingHumansPandemicsReverse Transcriptase Polymerase Chain ReactionSpecimen HandlingTemperatureCovid-19RTPCRViral transport medium

Identifiers

PMID35393127
PMCPMC8979488

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.