Evidence map›Paper›PMID 35392804›Full record

ArticleBMC genomics2022

Physiological attributes and transcriptomics analyses reveal the mechanism response of Helictotrichon virescens to low temperature stress.

Mingjun Cheng, Kuoshu Cui, Mingmin Zheng, Tao Yang, Junjun Zheng, Xiaofeng Li, Xuan Luo, Yang Zhou, Ruizhen Zhang, Donghai Yan and 4 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Mingjun ChengInstitute of qinghai-tibetan Plateau, Southwest Minzu University, Chengdu, 610041, China.
Kuoshu CuiSichuan Agricultural Technology Extension Station, Chengdu, 610041, China.
Mingmin ZhengCollege of Chemistry and Life Sciences, Chengdu Normal University, Chengdu, 611130, China.
Tao YangMaize Research Institute, Sichuan Agricultural University, Chengdu, 611130, China.
Junjun ZhengMaize Research Institute, Sichuan Agricultural University, Chengdu, 611130, China.
Xiaofeng LiMaize Research Institute, Sichuan Agricultural University, Chengdu, 611130, China.
Xuan LuoInstitute of Agricultural Information and Rural Economy, Sichuan Academy of Agricultural Sciences, Sichuan, Chengdu, 610066, China.
Yang ZhouMaize Research Institute, Sichuan Agricultural University, Chengdu, 611130, China.
Ruizhen ZhangSichuan Grass Industry Technology Research and Promotion Center, Chengdu, 610041, China.
Donghai YanSichuan Grass Industry Technology Research and Promotion Center, Chengdu, 610041, China.
Mingjiu YaoSichuan Grass Industry Technology Research and Promotion Center, Chengdu, 610041, China.
Muhammad Zafar IqbalMaize Research Institute, Sichuan Agricultural University, Chengdu, 611130, China.
Qingping ZhouInstitute of qinghai-tibetan Plateau, Southwest Minzu University, Chengdu, 610041, China.
Ruyu HeMaize Research Institute, Sichuan Agricultural University, Chengdu, 611130, China. 243535990@qq.com.
Sichuan Agricultural University · CNSouthwest Minzu University · CNChengdu Normal University · CNSichuan Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHelictotrichon virescens is a perennial grass that is primarily distributed in high altitude areas of 2000 ~ 4500 m. It is widely cultivated in the Qinghai-Tibet Plateau of China, strongly resistant to cold, and an essential part of the wild herbs in this region. However, the molecular mechanism of the response of H. virescens to low temperature stress and the key regulatory genes for specific biological processes are poorly understood.

resultsPhysiological and transcriptome analyses were used to study the cold stress response mechanism in H virescens. During the low temperature stress period, the content of chlorophyll a and b decreased more and more with the delay of the treatment time. Among them, the difference between the controls was not significant, and the difference between the control and the treatment was significant. At the same time, the expression of related differential genes was up-regulated during low temperature treatment. In addition, the plant circadian pathway is crucial for their response to cold stress. The expression of differentially expressed genes that encode LHY and HY5 were strongly up-regulated during cold stress.

conclusionsThis study should help to fully understand how H. virescens responds to low temperatures. It answers pertinent questions in the response of perennial herbs to cold stress, i.e., how light and low temperature signals integrate to regulate plant circadian rhythms and Decrease of content of chlorophylls (which can be also accompanied with decrease of total quantity of reaction centers) leads to an increase in photosynthetic damage.

Indexed as

Gene Expression Regulation, PlantTranscriptomeChlorophyll ACold-Shock ResponseCold TemperatureGene Expression ProfilingPoaceaeStress, PhysiologicalTemperatureChlorophyll ACircadian rhythmHelictotrichon virescensHY5LHYLow temperature stressPhotosynthesis

Identifiers

PMID35392804
PMCPMC8991566
OpenAlexW4223507899

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.