Evidence map›Paper›PMID 35391935›Full record

ArticleSTAR protocols2022

Generation of a CHIP isogenic human iPSC-derived cortical neuron model for functional proteomics.

Catarina Dias, Erisa Nita, Jakub Faktor, Lenka Hernychova, Tilo Kunath, Kathryn L Ball

Open access · goldAbstract read
In one paragraph

Article in STAR protocols, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Catarina DiasInstitute of Genetics and Cancer, University of Edinburgh, EH4 2XU Edinburgh, UK.
Erisa NitaInstitute of Genetics and Cancer, University of Edinburgh, EH4 2XU Edinburgh, UK.
Jakub FaktorInternational Centre for Cancer Vaccine Science, University of Gdańsk, ul. Kładki 24, 80-822 Gdańsk, Poland.
Lenka HernychovaResearch Centre for Applied Molecular Oncology, Masaryk Memorial Cancer Institute, 656 53 Brno, Czech Republic.
Tilo KunathMRC Centre for Regenerative Medicine, Institute for Stem Cell Research, School of Biological Sciences, The University of Edinburgh, EH16 4UU Edinburgh, UK.
Kathryn L BallInstitute of Genetics and Cancer, University of Edinburgh, EH4 2XU Edinburgh, UK.
Edinburgh Cancer Research · GBMasaryk Memorial Cancer Institute · CZMRC Centre for Regenerative Medicine · GBUniversity of Gdańsk · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The neuroprotective E3-ubiquitin ligase CHIP is linked to healthy aging. Here, we present a protocol using a patient-derived iPSC line with a triplication of the α-synuclein gene to produce gene-edited cells isogenic for CHIP. We describe iPSC differentiation into cortical neurons and their identity validation. We then detail mass spectrometry-based approaches (SWATH-MS) to identify dominant changes in the steady state proteome generated by loss of CHIP function. This protocol can be adapted to other proteins that impact proteostasis in neurons. For complete details on the use and execution of this protocol, please refer to Dias et al. (2021).

Indexed as

Induced Pluripotent Stem CellsHumansMass SpectrometryNeuronsProteomeProteomicsProteomeCell BiologyCell cultureCell DifferentiationCRISPRMass SpectrometryNeuroscienceProteomicsStem Cells

Identifiers

PMID35391935
PMCPMC8980993
OpenAlexW4223626938

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.