Evidence map›Paper›PMID 35388616›Full record

SynthesisAging cell2022

Transcriptional landscape of human microglia implicates age, sex, and APOE-related immunometabolic pathway perturbations.

Tulsi Patel, Troy P Carnwath, Xue Wang, Mariet Allen, Sarah J Lincoln, Laura J Lewis-Tuffin, Zachary S Quicksall, Shu Lin, Frederick Q Tutor-New, Charlotte C G Ho and 12 more

Abstract readMeta-Analysis
In one paragraph

Synthesis in Aging cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Tulsi PatelDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, USA.
Troy P CarnwathDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, USA.
Xue WangDepartment of Quantitative Health Sciences, Mayo Clinic, Jacksonville, Florida, USA.
Mariet AllenDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, USA.
Sarah J LincolnDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, USA.
Laura J Lewis-TuffinDepartment of Cancer Biology, Mayo Clinic, Jacksonville, Florida, USA.
Zachary S QuicksallDepartment of Quantitative Health Sciences, Mayo Clinic, Jacksonville, Florida, USA.
Shu LinDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, USA.
Frederick Q Tutor-NewDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, USA.
Charlotte C G HoDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, USA.
Yuhao MinDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, USA.
Kimberly G MalphrusDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, USA.
Thuy T NguyenDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, USA.
Elizabeth MartinDepartment of Neurosurgery, Mayo Clinic, Jacksonville, Florida, USA.
Cesar A GarciaDepartment of Neurosurgery, Mayo Clinic, Jacksonville, Florida, USA.
Rawan M AlkharbooshDepartment of Neurosurgery, Mayo Clinic, Jacksonville, Florida, USA.
Sanjeet GrewalDepartment of Neurosurgery, Mayo Clinic, Jacksonville, Florida, USA.
Kaisorn ChaichanaDepartment of Neurosurgery, Mayo Clinic, Jacksonville, Florida, USA.
Robert WharenDepartment of Neurosurgery, Mayo Clinic, Jacksonville, Florida, USA.
Hugo Guerrero-CazaresDepartment of Neurosurgery, Mayo Clinic, Jacksonville, Florida, USA.
Alfredo Quinones-HinojosaDepartment of Neurosurgery, Mayo Clinic, Jacksonville, Florida, USA.
Nilüfer Ertekin-TanerDepartment of Neuroscience, Mayo Clinic, Jacksonville, Florida, USA.ORCID 0000-0003-4436-8889

Funding

Vascular Structure and Function in Cognitive AgingP01AG003949 · NIA · YESHIVA UNIVERSITY · PI Charles B Hall · 1985 to 2026
$73.9M
Alzheimer's Disease Genetics ConsortiumU01AG032984 · NIA · UNIVERSITY OF PENNSYLVANIA · PI SCHELLENBERG, GERARD DAVID · 2009 to 2024
$60.4M
SUPPLEMENT TO ALZHEIMERS DISEASE PATIENT REGISTRYU01AG006786 · NIA · MAYO CLINIC ROCHESTER · PI GRAFF-RADFORD, JONATHAN, JACK, CLIFFORD R. · 1986 to 2023
$49.6M
SUPPLEMENT TO RUSH ALZHEIMERS DISEASE CENTER COREP30AG010161 · NIA · RUSH UNIVERSITY MEDICAL CENTER · PI LEURGANS, SUE E. · 1991 to 2020
$49.1M
EPIDEMIOLOGY OF NEURAL RESERVE AND NEUROBIOLOGY IN AGINGR01AG017917 · NIA · RUSH UNIVERSITY MEDICAL CENTER · PI BENNETT, DAVID ALAN · 2001 to 2023
$43.3M
THE PGRN/TDP-43 AXIS IN ALZHEIMER?S DISEASE AND NEURODEGENERATIONP50AG016574 · NIA · MAYO CLINIC ROCHESTER · PI PETERSEN, RONALD C · 1999 to 2018
$36.9M
Research Education ComponentP30AG062677 · NIA · MAYO CLINIC ROCHESTER · PI NILUFER ERTEKIN-TANER · 2019 to 2026
$33.5M
Research Education ComponentP30AG019610 · NIA · SUN HEALTH RESEARCH INSTITUTE · PI REIMAN, ERIC MICHAEL · 2001 to 2020
$32.5M
Integrative Network Biology Approaches to Identify, Characterize and Validate Molecular Subtypes in Alzheimer's DiseaseU01AG046170 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI WANG, MINGHUI, ZHANG, BIN · 2013 to 2022
$26.0M
Integrating the exposome and methylome to inform brain molecular changes in ADRD across established diverse cohorts.U01AG046139 · NIA · UNIVERSITY OF FLORIDA · PI ERTEKIN-TANER, NILUFER, FUNK, CORY · 2013 to 2022
$24.6M
RISK FACTORS, PATHOLOGY, AND CLINICAL EXPRESSIONS OF ADR01AG015819 · NIA · RUSH UNIVERSITY MEDICAL CENTER · PI BENNETT, DAVID ALAN · 1998 to 2024
$21.4M
Multi-omic network-directed proteoform discovery, dissection and functional validation to prioritize novel AD therapeutic targetsU01AG061356 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BENNETT, DAVID ALAN, DE JAGER, PHILIP L · 2018 to 2022
$13.7M
NIA NIH HHS P01 AG003949NIA NIH HHS P01 AG017216NIA NIH HHS P30 AG010161NIA NIH HHS P30 AG019610NIA NIH HHS P30 AG062677NIA NIH HHS P50 AG016574NIA NIH HHS P50 AG025711NIA NIH HHS R01 AG015819NIA NIH HHS R01 AG017917NIA NIH HHS R01 AG018023NIA NIH HHS R01 AG030146NIA NIH HHS R01 AG032990NIA NIH HHS R01 AG036042NIA NIH HHS R01 AG036836NIA NIH HHS R01 AG048015NIA NIH HHS R01 AG061796NIA NIH HHS RC2 AG036547NIA NIH HHS RF1 AG051504NIA NIH HHS RF1 AG057473NIA NIH HHS U01 AG006786NIA NIH HHS U01 AG032984NIA NIH HHS U01 AG046139NIA NIH HHS U01 AG046152NIA NIH HHS U01 AG046161NIA NIH HHS U01 AG046170NIA NIH HHS U01 AG061356NINDS NIH HHS R01 NS080820NINDS NIH HHS U24 NS072026
6 · The paper itself

Abstract

Microglia have fundamental roles in health and disease; however, effects of age, sex, and genetic factors on human microglia have not been fully explored. We applied bulk and single-cell approaches to comprehensively characterize human microglia transcriptomes and their associations with age, sex, and APOE. We identified a novel microglial signature, characterized its expression in bulk tissue and single-cell microglia transcriptomes. We discovered microglial co-expression network modules associated with age, sex, and APOE-ε4 that are enriched for lipid and carbohydrate metabolism genes. Integrated analyses of modules with single-cell transcriptomes revealed significant overlap between age-associated module genes and both pro-inflammatory and disease-associated microglial clusters. These modules and clusters harbor known neurodegenerative disease genes including APOE, PLCG2, and BIN1. Meta-analyses with published bulk and single-cell microglial datasets further supported our findings. Thus, these data represent a well-characterized human microglial transcriptome resource and highlight age, sex, and APOE-related microglial immunometabolism perturbations with potential relevance in neurodegeneration.

Indexed as

Alzheimer DiseaseNeurodegenerative DiseasesApolipoproteins EHumansMicrogliaTranscriptomeApolipoproteins EAPOElipid metabolismmicroglianeurodegenerationsingle celltranscriptomics

Identifiers

PMID35388616
PMCPMC9124307

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.