Evidence map›Paper›PMID 35388424›Full record

ArticleMicroscopy (Oxford, England)2022

Improved chemical fixation of lipid-secreting plant cells for transmission electron microscopy.

Shingo Kiyoto, Takuji Ichino, Tatsuya Awano, Kazufumi Yazaki

Open access · hybridAbstract read
In one paragraph

Article in Microscopy (Oxford, England), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Inventory of ATP-binding cassette proteins in Lithospermum erythrorhizon as a model plant producing divergent secondary metabolites.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Shingo KiyotoLaboratory of Tree Cell Biology, Division of Forest and Biomaterials Science, Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.ORCID 0000-0002-5228-9964
Takuji IchinoLaboratory of Plant Gene Expression, Research Institute for Sustainable Humanosphere (RISH), Kyoto University, Uji, 611-0011, Japan.ORCID 0000-0001-9058-5660
Tatsuya AwanoLaboratory of Tree Cell Biology, Division of Forest and Biomaterials Science, Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.ORCID 0000-0002-4735-4506
Kazufumi YazakiLaboratory of Plant Gene Expression, Research Institute for Sustainable Humanosphere (RISH), Kyoto University, Uji, 611-0011, Japan.ORCID 0000-0003-2523-6418
Kyoto University · JP

Funding

Grants-in-Aid for Scientific Research JP19H05638
6 · The paper itself

Abstract

Cultured Lithospermum erythrorhizon cells were fixed with a new fixation method to visualize the metabolism of shikonin derivatives, the lipophilic naphthoquinone pigments in Boraginaceae. The new fixation method combined glutaraldehyde containing malachite green, imidazole-osmium and p-phenylenediamine treatments, and cells were then observed with a transmission electron microscope. The method prevented the extraction of lipids, including shikonin derivatives, and improved the visualization of subcellular structures, especially the membrane system, when compared with that of conventional fixation. The improved quality of the transmission electron micrographs is because malachite green ionically binds to the plasma membrane, organelles and lipids and acts as a mordant for electron staining with osmium tetroxide. Imidazole promotes the reaction of osmium tetroxide, leading to enhanced electron staining. p-Phenylenediamine reduces osmium tetroxide bound to cellular materials and increases the electron density. This protocol requires only three additional reagents over conventional chemical fixation using glutaraldehyde and osmium tetroxide.

Indexed as

Osmium TetroxidePlant CellsGlutaralImidazolesLipidsMicroscopy, ElectronMicroscopy, Electron, TransmissionGlutaralImidazolesLipidsOsmium TetroxideimidazoleLithospermum erythrorhizonmalachite greenp-phenylenediamineshikonintransmission electron microscopy

Identifiers

PMID35388424
PMCPMC9340797
OpenAlexW4226140683

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.