ArticleScientific reports2022
Association mapping of autumn-seeded rye (Secale cereale L.) reveals genetic linkages between genes controlling winter hardiness and plant development.
Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed, 14 citations in OpenAlex.
- Article
- Identification of targets for introgression from rye (Frontiers in plant science · 2026Article
- Time-course transcriptome and WGCNA reveal tissue-specific genes in 'White BK-1' rye during early cold acclimation stage.Frontiers in plant science · 2026Article
- Population genomics of Aosta Valley rye landraces reveals genetic structure and diversity patterns relevant for germplasm conservation.Frontiers in plant science · 2026Article
- Diversity of cereal rye (Secale cereale) germplasm in the Southeast United States.The plant genome · 2025Article
- Effect of geographical origin, regional adaptation, genotype, and release year on winter hardiness of wheat and triticale accessions evaluated for six decades in trials.Scientific reports · 2025Article
- Genome-wide characterization ofFrontiers in plant science · 2025Article
- Temperature-Caused Changes in Raman Pattern and Protein Profiles of Winter Triticale (xMolecules (Basel, Switzerland) · 2024Article
- Genome-Wide Association Analysis of Freezing Tolerance and Winter Hardiness in Winter Wheat of Nordic Origin.Plants (Basel, Switzerland) · 2023Article
- TheCells · 2023Review
- Improving Yield and Yield Stability in Winter Rye by Hybrid Breeding.Plants (Basel, Switzerland) · 2022Review
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Authors and funding
7 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Winter field survival (WFS) in autumn-seeded winter cereals is a complex trait associated with low temperature tolerance (LTT), prostrate growth habit (PGH), and final leaf number (FLN). WFS and the three sub-traits were analyzed by a genome-wide association study of 96 rye (Secale cereal L.) genotypes of different origins and winter-hardiness levels. A total of 10,244 single nucleotide polymorphism (SNP) markers were identified by genotyping by sequencing and 259 marker-trait-associations (MTAs; p < 0.01) were revealed by association mapping. The ten most significant SNPs (p < 1.49e-04) associated with WFS corresponded to nine strong candidate genes: Inducer of CBF Expression 1 (ICE1), Cold-regulated 413-Plasma Membrane Protein 1 (COR413-PM1), Ice Recrystallization Inhibition Protein 1 (IRIP1), Jasmonate-resistant 1 (JAR1), BIPP2C1-like protein phosphatase, Chloroplast Unusual Positioning Protein-1 (CHUP1), FRIGIDA-like 4 (FRL4-like) protein, Chalcone Synthase 2 (CHS2), and Phenylalanine Ammonia-lyase 8 (PAL8). Seven of the candidate genes were also significant for one or several of the sub-traits supporting the hypothesis that WFS, LTT, FLN, and PGH are genetically interlinked. The winter-hardy rye genotypes generally carried additional allele variants for the strong candidate genes, which suggested allele diversity was a major contributor to cold acclimation efficiency and consistent high WFS under varying field conditions.
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