Evidence map›Paper›PMID 35387584›Full record

ArticleBMC ecology and evolution2022

Selection and demography drive range-wide patterns of MHC-DRB variation in mule deer.

Rachel M Cook, Brittany Suttner, Rachael M Giglio, Margaret L Haines, Emily K Latch

Open access · goldAbstract read
In one paragraph

Article in BMC ecology and evolution, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. MHC Diversity Across Time and Space.Ecology and evolution · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Rachel M CookDepartment of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, 53211, USA. cookrachel52@gmail.com.
Brittany SuttnerDepartment of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, 53211, USA.
Rachael M GiglioDepartment of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, 53211, USA.
Margaret L HainesDepartment of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, 53211, USA.
Emily K LatchDepartment of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, 53211, USA.
University of Wisconsin–Milwaukee · USAnimal and Plant Health Inspection Service · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundStanding genetic variation is important especially in immune response-related genes because of threats to wild populations like the emergence of novel pathogens. Genetic variation at the major histocompatibility complex (MHC), which is crucial in activating the adaptive immune response, is influenced by both natural selection and historical population demography, and their relative roles can be difficult to disentangle. To provide insight into the influences of natural selection and demography on MHC evolution in large populations, we analyzed geographic patterns of variation at the MHC class II DRB exon 2 locus in mule deer (Odocoileus hemionus) using sequence data collected across their entire broad range.

resultsWe identified 31 new MHC-DRB alleles which were phylogenetically similar to other cervid MHC alleles, and one allele that was shared with white-tailed deer (Odocoileus virginianus). We found evidence for selection on the MHC including high dN/dS ratios, positive neutrality tests, deviations from Hardy-Weinberg Equilibrium (HWE) and a stronger pattern of isolation-by-distance (IBD) than expected under neutrality. Historical demography also shaped variation at the MHC, as indicated by similar spatial patterns of variation between MHC and microsatellite loci and a lack of association between genetic variation at either locus type and environmental variables.

conclusionsOur results show that both natural selection and historical demography are important drivers in the evolution of the MHC in mule deer and work together to shape functional variation and the evolution of the adaptive immune response in large, well-connected populations.

Indexed as

DeerAnimalsDemographyGenetic VariationMajor Histocompatibility ComplexSequence Analysis, DNAAdaptationCervidaeGenetic driftGenetic variationHistorical demographyMajor histocompatibility complexMicrosatellitesNatural selectionNext-generation sequencingParasite-mediated selection

Identifiers

PMID35387584
PMCPMC8988406
OpenAlexW4223474138

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.