Evidence map›Paper›PMID 35386855›Full record

Article... IEEE International Conference on Computer Vision workshops. IEEE International Conference on Computer Vision2021

DMNet: Dual-Stream Marker Guided Deep Network for Dense Cell Segmentation and Lineage Tracking.

Rina Bao, Noor M Al-Shakarji, Filiz Bunyak, Kannappan Palaniappan

Open access · greenAbstract read
In one paragraph

Article in ... IEEE International Conference on Computer Vision workshops. IEEE International Conference on Computer Vision, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Ensemble Deep Learning Object Detection Fusion for Cell Tracking, Mitosis, and Lineage.IEEE open journal of engineering in medicine and biology · 2024
    Article
  5. Article
  6. Article
  7. Deep Learning-Based Cell Detection and Extraction in Thin Blood Smears for Malaria Diagnosis.IEEE Applied Imagery Pattern Recognition Workshop : [proceedings]. IEEE Applied Imagery Pattern Recognition Workshop · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Rina BaoUniversity of Missouri-Columbia, MO 65211, USA.
Noor M Al-ShakarjiUniversity of Missouri-Columbia, MO 65211, USA.
Filiz BunyakUniversity of Missouri-Columbia, MO 65211, USA.
Kannappan PalaniappanUniversity of Missouri-Columbia, MO 65211, USA.
University of Missouri · US

Funding

Quantitative analysis of estrogen and sleep deprivation-induced blood and lymphatic vascular remodeling in the brain systemR01NS110915 · NINDS · UNIVERSITY OF MISSOURI-COLUMBIA · PI GLINSKII, OLGA V, PALANIAPPAN, KANNAPPAN · 2019 to 2023
$2.7M
NINDS NIH HHS R01 NS110915
6 · The paper itself

Abstract

Accurate segmentation and tracking of cells in microscopy image sequences is extremely beneficial in clinical diagnostic applications and biomedical research. A continuing challenge is the segmentation of dense touching cells and deforming cells with indistinct boundaries, in low signal-to-noise-ratio images. In this paper, we present a dual-stream marker-guided network (DMNet) for segmentation of touching cells in microscopy videos of many cell types. DMNet uses an explicit cell marker-detection stream, with a separate mask-prediction stream using a distance map penalty function, which enables supervised training to focus attention on touching and nearby cells. For multi-object cell tracking we use M2Track tracking-by-detection approach with multi-step data association. Our M2Track with mask overlap includes short term track-to-cell association followed by track-to-track association to re-link tracklets with missing segmentation masks over a short sequence of frames. Our combined detection, segmentation and tracking algorithm has proven its potential on the IEEE ISBI 2021 6th Cell Tracking Challenge (CTC-6) where we achieved multiple top three rankings for diverse cell types. Our team name is MU-Ba-US, and the implementation of DMNet is available at, http://celltrackingchallenge.net/participants/MU-Ba-US/.

Identifiers

PMID35386855
PMCPMC8982054
OpenAlexW3209336740

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.