Evidence map›Paper›PMID 35385747›Full record

ArticleCell reports2022

Suppression of p53 response by targeting p53-Mediator binding with a stapled peptide.

Benjamin L Allen, Kim Quach, Taylor Jones, Cecilia B Levandowski, Christopher C Ebmeier, Jonathan D Rubin, Timothy Read, Robin D Dowell, Alanna Schepartz, Dylan J Taatjes

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Transcription factors in fibroblast plasticity and CAF heterogeneity.Journal of experimental & clinical cancer research : CR · 2023
    Review
  8. Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Benjamin L AllenDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.
Kim QuachDepartment of Chemistry, Yale University, New Haven, CT 06520, USA.
Taylor JonesDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.
Cecilia B LevandowskiDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.
Christopher C EbmeierDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.
Jonathan D RubinDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.
Timothy ReadDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA; Department of Medicine, Division of Genetics, Brigham & Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.
Robin D DowellDepartment of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, CO 80303, USA; BioFrontiers Institute, University of Colorado, Boulder, CO 80303, USA.
Alanna SchepartzDepartment of Chemistry, Yale University, New Haven, CT 06520, USA; Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA; Department of Chemistry, University of California, Berkeley, CA 94720, USA. Electronic address: schepartz@berkeley.edu.
Dylan J TaatjesDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA. Electronic address: taatjes@colorado.edu.
University of Colorado Boulder · USUniversity of California, Berkeley · USYale University · US

Funding

TRAINING IN SIGNAL TRANSDUCTION &CELL CYCLE REGULATIONT32GM008759 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI AHN, NATALIE G. · 2000 to 2020
$5.9M
Fluorescence tools that illuminate biology and inspire translationR35GM134963 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Alanna Schepartz · 2020 to 2026
$4.7M
Predoctoral Training Molecular BiophysicsT32GM065103 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI FALKE, JOSEPH J · 2002 to 2021
$4.3M
Supplemental request for MAX-TL Ultracentrifuge and rotorR35GM139550 · NIGMS · UNIVERSITY OF COLORADO · PI Dylan J Taatjes · 2021 to 2026
$3.8M
Predoctoral Training Program in Signaling and Cellular Regulation INCLUDE Down Syndrome SupplementT32GM142607 · NIGMS · UNIVERSITY OF COLORADO · PI Sabrina Leigh Spencer, Tin Tin Su · 2021 to 2026
$3.6M
Directing the Mediator Complex: Bivalent approaches to Reconstituting or InhibitiR01CA170741 · NCI · YALE UNIVERSITY · PI SCHEPARTZ, ALANNA, TAATJES, DYLAN J · 2012 to 2016
$1.9M
A Technique for Measuring Transcription Factor ActivityR01GM125871 · NIGMS · UNIVERSITY OF COLORADO · PI DOWELL-DEEN, ROBIN DEANNE · 2018 to 2021
$1.6M
Mediator Kinases and Transcription RegulationR01GM117370 · NIGMS · UNIVERSITY OF COLORADO · PI TAATJES, DYLAN J · 2016 to 2019
$1.5M
How does p53 binding affect eRNA-dependent transcriptional regulation?F32GM122361 · NIGMS · UNIVERSITY OF COLORADO · PI READ, TIMOTHY · 2017 to 2019
$179k
∆Np53 as a Regulator of p53 BiologyF30AG054091 · NIA · UNIVERSITY OF COLORADO · PI LEVANDOWSKI, CECILIA BLAIR · 2016 to 2019
$162k
NCI NIH HHS R01 CA170741NIA NIH HHS F30 AG054091NIGMS NIH HHS F32 GM122361NIGMS NIH HHS R01 GM117370NIGMS NIH HHS R01 GM125871NIGMS NIH HHS R35 GM134963NIGMS NIH HHS R35 GM139550NIGMS NIH HHS T32 GM008759NIGMS NIH HHS T32 GM065103NIGMS NIH HHS T32 GM142607
6 · The paper itself

Abstract

DNA-binding transcription factors (TFs) remain challenging to target with molecular probes. Many TFs function in part through interaction with Mediator, a 26-subunit complex that controls RNA polymerase II activity genome-wide. We sought to block p53 function by disrupting the p53-Mediator interaction. Through rational design and activity-based screening, we characterize a stapled peptide, with functional mimics of both p53 activation domains, that blocks p53-Mediator binding and selectively inhibits p53-dependent transcription in human cells; importantly, this "bivalent" peptide has negligible impact, genome-wide, on non-p53 target genes. Our proof-of-concept strategy circumvents the TF entirely and targets the TF-Mediator interface instead, with desired functional outcomes (i.e., selective inhibition of p53 activation). Furthermore, these results demonstrate that TF activation domains represent viable starting points for Mediator-targeting molecular probes, as an alternative to large compound libraries. Different TFs bind Mediator through different subunits, suggesting this strategy could be broadly applied to selectively alter gene expression programs.

Indexed as

Transcription FactorsTumor Suppressor Protein p53HumansMolecular ProbesPeptidesProtein BindingMolecular ProbesPeptidesTP53 protein, humanTranscription FactorsTumor Suppressor Protein p53AP-MSchemical biologyChIP-seqCP: Molecular biologyin vitro transcriptionMediator complexmolecular probesNutlin-3ap53proteomicsRNA-seqstapled peptidetranscription

Identifiers

PMID35385747
PMCPMC9044438
OpenAlexW4226060512

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.