Evidence map›Paper›PMID 35385605›Full record

ArticleChemMedChem2022

Structure-Activity Relationships for 5'' Modifications of 4,5-Aminoglycoside Antibiotics.

Jonathan C K Quirke, Girish C Sati, Amr Sonousi, Marina Gysin, Klara Haldimann, Erik C Böttger, Andrea Vasella, Sven N Hobbie, David Crich

Abstract read
In one paragraph

Article in ChemMedChem, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Pangenome analysis ofAntimicrobial agents and chemotherapy · 2026
    Article
  2. Article
  3. Phenotypic Differentiation Within theAntibiotics (Basel, Switzerland) · 2024
    Article
  4. Article
  5. Review
  6. Article
  7. Ribosome-targeting antibiotics and resistanceRSC medicinal chemistry · 2023
    Review
  8. Article
  9. Synthesis, Antibacterial and Antiribosomal Activity of the 3Antibiotics (Basel, Switzerland) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jonathan C K QuirkeDepartment of Pharmaceutical and Biomedical Sciences and, Department of Chemistry and Complex Carbohydrate Research Center, University of Georgia, 250 West Green Street, Athens, GA 30602, USA.ORCID 0000-0002-5877-2770
Girish C SatiDepartment of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, MI 48202, USA.ORCID 0000-0002-2861-9353
Amr SonousiDepartment of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, MI 48202, USA.ORCID 0000-0002-7111-8837
Marina GysinInstitute of Medical Microbiology, University of Zurich, Gloriastrasse 28, 8006, Zürich, Switzerland.ORCID 0000-0002-0798-0828
Klara HaldimannInstitute of Medical Microbiology, University of Zurich, Gloriastrasse 28, 8006, Zürich, Switzerland.
Erik C BöttgerInstitute of Medical Microbiology, University of Zurich, Gloriastrasse 28, 8006, Zürich, Switzerland.
Andrea VasellaOrganic Chemistry Laboratory, ETH Zürich, Vladimir-Prelog-Weg 1-5/10, 093, Zürich, Switzerland.ORCID 0000-0001-5989-0712
Sven N HobbieInstitute of Medical Microbiology, University of Zurich, Gloriastrasse 28, 8006, Zürich, Switzerland.ORCID 0000-0002-9205-0384
David CrichDepartment of Pharmaceutical and Biomedical Sciences and, Department of Chemistry and Complex Carbohydrate Research Center, University of Georgia, 250 West Green Street, Athens, GA 30602, USA.ORCID 0000-0003-2400-0083

Funding

Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Shaping Next Generation Aminoglycoside Antibiotics for Treatment of Multidrug-Resistant DiseasesR01AI123352 · NIAID · WAYNE STATE UNIVERSITY · PI CRICH, DAVID · 2016 to 2019
$2.7M
NIAID NIH HHS R01 AI123352NIGMS NIH HHS P41 GM103311
6 · The paper itself

Abstract

Modification at the 5''-position of 4,5-disubstituted aminoglycoside antibiotics (AGAs) to circumvent inactivation by aminoglycoside modifying enzymes (AMEs) is well known. Such modifications, however, unpredictably impact activity and affect target selectivity thereby hindering drug development. A survey of 5''-modifications of the 4,5-AGAs and the related 5-O-furanosyl apramycin derivatives is presented. In the neomycin and the apralog series, all modifications were well-tolerated, but other 4,5-AGAs require a hydrogen bonding group at the 5''-position for maintenance of antibacterial activity. The 5''-amino modification resulted in parent-like activity, but reduced selectivity against the human cytosolic decoding A site rendering this modification unfavorable in paromomycin, propylamycin, and ribostamycin. Installation of a 5''-formamido group and, to a lesser degree, a 5''-ureido group resulted in parent-like activity without loss of selectivity. These lessons will aid the design of next-generation AGAs capable of circumventing AME action while maintaining high antibacterial activity and target selectivity.

Indexed as

AminoglycosidesRibosomesAnti-Bacterial AgentsHumansNeomycinProtein Synthesis InhibitorsStructure-Activity RelationshipAminoglycosidesAnti-Bacterial AgentsNeomycinProtein Synthesis Inhibitorsaminoglycoside modifying enzymesantibacterialantiribosomalototoxicity

Identifiers

PMID35385605
PMCPMC9256791

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.