Evidence map›Paper›PMID 35385558›Full record

ArticlePLoS pathogens2022

The WOPR family protein Ryp1 is a key regulator of gene expression, development, and virulence in the thermally dimorphic fungal pathogen Coccidioides posadasii.

M Alejandra Mandel, Sinem Beyhan, Mark Voorhies, Lisa F Shubitz, John N Galgiani, Marc J Orbach, Anita Sil

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. OptimizingmSphere · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. The Host Response to Coccidioidomycosis.Journal of fungi (Basel, Switzerland) · 2024
    Review
  13. Journal of fungi (Basel, Switzerland) · 2024
    Article
  14. Role of theJournal of fungi (Basel, Switzerland) · 2024
    Article
  15. Review
  16. Article
  17. Coccidioides Species: A Review of Basic Research: 2022.Journal of fungi (Basel, Switzerland) · 2022
    Review
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

M Alejandra MandelSchool of Plant Sciences, University of Arizona, Tucson, Arizona, United States of America.ORCID 0000-0002-7620-3862
Sinem BeyhanDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, California, United States of America.
Mark VoorhiesDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, California, United States of America.ORCID 0000-0001-8815-7384
Lisa F ShubitzValley Fever Center for Excellence, University of Arizona, Tucson, Arizona, United States of America.ORCID 0000-0003-1011-0708
John N GalgianiValley Fever Center for Excellence, University of Arizona, Tucson, Arizona, United States of America.
Marc J OrbachSchool of Plant Sciences, University of Arizona, Tucson, Arizona, United States of America.ORCID 0000-0001-7714-1352
Anita SilDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, California, United States of America.ORCID 0000-0002-3987-7534
University of Arizona · USUniversity of California, San Francisco · US

Funding

Vaccines and Diagnostics TrialsU54AI065359 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI BARBOUR, ALAN G. · 2005 to 2013
$88.8M
Virulence gene discovery in CoccidioidesU19AI166798 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Satya Dandekar · 2022 to 2026
$10.5M
Innate immune mechanisms of the host response to CoccidioidesU19AI166059 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Sinem Beyhan · 2022 to 2026
$10.0M
Gene Circuits that Control Morphology in HistoplasmaR01AI066224 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SIL, ANITA · 2005 to 2019
$5.2M
An Avirulent Arthroconidial Vaccine Candidate to Prevent Human CoccidioidomycosisR01AI132140 · NIAID · UNIVERSITY OF ARIZONA · PI GALGIANI, JOHN N · 2017 to 2020
$4.8M
Evolutionary multispecies transcriptomics to reveal genes that govern fungal spore germination and pathogenesisR01AI146584 · NIAID · YALE UNIVERSITY · PI SIL, ANITA, TOWNSEND, JEFFREY PETER · 2019 to 2023
$3.9M
Gene circuits that control morphology in HistoplasmaR37AI066224 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Anita Sil · 2020 to 2026
$3.3M
Interplay between the heat shock response and histidine kinase pathways in the thermally dimorphic fungal pathogen Histoplasma capsulatumR01AI137418 · NIAID · J. CRAIG VENTER INSTITUTE, INC. · PI BEYHAN, SINEM · 2018 to 2023
$2.4M
Immuno-Genetic Basis for Human Disseminated CoccidioidomycosisU01AI122275 · NIAID · UNIVERSITY OF ARIZONA · PI GALGIANI, JOHN N, HOLLAND, STEVEN M · 2017 to 2020
$2.3M
Using Genetics and Genomics to Dissect Coccidioides SpherulationR21AI144855 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BREM, RACHEL BETH, SIL, ANITA · 2019 to 2020
$471k
NIAID NIH HHS R01 AI066224NIAID NIH HHS R01 AI132140NIAID NIH HHS R01 AI137418NIAID NIH HHS R01 AI146584NIAID NIH HHS R21 AI144855NIAID NIH HHS R37 AI066224NIAID NIH HHS U01 AI122275NIAID NIH HHS U19 AI166059NIAID NIH HHS U19 AI166798NIAID NIH HHS U54 AI065359
6 · The paper itself

Abstract

Coccidioides spp. are mammalian fungal pathogens endemic to the Southwestern US and other desert regions of Mexico, Central and South America, with the bulk of US infections occurring in California and Arizona. In the soil, Coccidioides grows in a hyphal form that differentiates into 3-5 micron asexual spores (arthroconidia). When arthroconidia are inhaled by mammals they undergo a unique developmental transition from polar hyphal growth to isotropic expansion with multiple rounds of nuclear division, prior to segmentation, forming large spherules filled with endospores. Very little is understood about the molecular basis of spherule formation. Here we characterize the role of the conserved transcription factor Ryp1 in Coccidioides development. We show that Coccidioides Δryp1 mutants have altered colony morphology under hypha-promoting conditions and are unable to form mature spherules under spherule-promoting conditions. We analyze the transcriptional profile of wild-type and Δryp1 mutant cells under hypha- and spherule-promoting conditions, thereby defining a set of hypha- or spherule-enriched transcripts ("morphology-regulated" genes) that are dependent on Ryp1 for their expression. Forty percent of morphology-regulated expression is Ryp1-dependent, indicating that Ryp1 plays a dual role in both hyphal and spherule development. Ryp1-dependent transcripts include key virulence factors such as SOWgp, which encodes the spherule outer wall glycoprotein. Concordant with its role in spherule development, we find that the Δryp1 mutant is completely avirulent in the mouse model of coccidioidomycosis, indicating that Ryp1-dependent pathways are essential for the ability of Coccidioides to cause disease. Vaccination of C57BL/6 mice with live Δryp1 spores does not provide any protection from lethal C. posadasii intranasal infection, consistent with our findings that the Δryp1 mutant fails to make mature spherules and likely does not express key antigens required for effective vaccination. Taken together, this work identifies the first transcription factor that drives mature spherulation and virulence in Coccidioides.

Indexed as

CoccidioidesTranscription FactorsAnimalsFungal ProteinsGene ExpressionMammalsMiceMice, Inbred C57BLSpores, FungalVirulenceFungal ProteinsTranscription Factors

Identifiers

PMID35385558
PMCPMC9015156
OpenAlexW4225503377

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.