Evidence map›Paper›PMID 35384041›Full record

SynthesisJournal of gastroenterology and hepatology2022

Immunogenetics of gastrointestinal cancers: A systematic review and retrospective survey of inborn errors of immunity in humans.

Beishi Zheng, Michael G Artin, Howard Chung, Bing Chen, Siming Sun, Benjamin L May, Chin Hur, Peter H R Green, Timothy C Wang, Jiheum Park and 1 more

Open access · greenAbstract readSystematic Review
In one paragraph

Synthesis in Journal of gastroenterology and hepatology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Exploring gastric cancer genetics: A turning point in common variable immunodeficiency.The journal of allergy and clinical immunology. Global · 2024
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Beishi ZhengDivision of Digestive and Liver Disease, Department of Medicine, Columbia University Irving Medical Center, New York, New York, USA.
Michael G ArtinDivision of Digestive and Liver Disease, Department of Medicine, Columbia University Irving Medical Center, New York, New York, USA.
Howard ChungDivision of Digestive and Liver Disease, Department of Medicine, Columbia University Irving Medical Center, New York, New York, USA.
Bing ChenDivision of Digestive and Liver Disease, Department of Medicine, Columbia University Irving Medical Center, New York, New York, USA.
Siming SunDivision of Digestive and Liver Disease, Department of Medicine, Columbia University Irving Medical Center, New York, New York, USA.
Benjamin L MayDivision of Digestive and Liver Disease, Department of Medicine, Columbia University Irving Medical Center, New York, New York, USA.
Chin HurDivision of Digestive and Liver Disease, Department of Medicine, Columbia University Irving Medical Center, New York, New York, USA.
Peter H R GreenDivision of Digestive and Liver Disease, Department of Medicine, Columbia University Irving Medical Center, New York, New York, USA.
Timothy C WangDivision of Digestive and Liver Disease, Department of Medicine, Columbia University Irving Medical Center, New York, New York, USA.
Jiheum ParkDivision of Digestive and Liver Disease, Department of Medicine, Columbia University Irving Medical Center, New York, New York, USA.
Xiao-Fei KongDivision of Digestive and Liver Disease, Department of Medicine, Columbia University Irving Medical Center, New York, New York, USA.ORCID https://orcid.org/0000-0001-9983-2373
Columbia University Irving Medical Center · US

Funding

The Organoid and Cell Culture CoreP30DK132710 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Peter Alan Sims · 2022 to 2026
$7.2M
Multidisciplinary Training in Translational Gastrointestinal and Liver ResearchT32DK083256 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Timothy Cragin Wang · 2009 to 2026
$5.5M
A Personalized Approach to Targeted Esophageal Cancer ScreeningR01CA247790 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HUR, CHIN · 2020 to 2024
$2.5M
A genetic and immunological investigation of JAK-STAT in the pathogenesis of Celiac DiseaseK08DK128631 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI KONG, XIAO-FEI · 2021 to 2025
$827k
Domain-Knowledge Informed Deep Learning for Early Detection of Pancreatic CancerR21CA265400 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HUR, CHIN, TATONETTI, NICHOLAS P · 2021 to 2022
$400k
National Institute of Diabetes and Digestive and Kidney Diseases of the National Institutes of Health K08DK128631NCI NIH HHS R01 CA247790NCI NIH HHS R21 CA265400NIDDK NIH HHS K08 DK128631NIDDK NIH HHS P30 DK132710NIDDK NIH HHS T32 DK083256
6 · The paper itself

Abstract

BACKGROUND AND

aimHumans with inborn errors of immunity (IEI), or primary immunodeficiencies, may be associated with a potential risk factor for early-onset gastrointestinal (GI) cancer.

methodsWe systematically reviewed all cases with clinical diagnoses of both an IEI and a GI cancer in three databases (MEDLINE, SCOPUS, and EMBASE). In total, 76 publications satisfying our inclusion criteria were identified, and data for 149 cases were analyzed. We also searched our institutional cancer registry for such cases.

resultsWe identified 149 patients with both an IEI and a GI cancer, 95 presented gastric cancer, 13 small bowel cancer, 35 colorectal cancer, and 6 had an unspecified cancer or cancer at another site. Gastric and colon adenocarcinomas were the most common. For both gastric and colorectal cancers, age at onset was significantly earlier in patients with IEIs than in the general population, based on the SEER database. Common variable immunodeficiency (CVID) was the most common IEI associated with gastrointestinal cancer. About 12% of patients had molecular genetic diagnoses, the three most frequently implicated genes being ATM, CARMIL2, and CTLA4. Impaired humoral immunity and Epstein-Barr virus (EBV) infection were frequently reported as factors potentially underlying early-onset GI cancers in patients with IEIs. We identified one patient with CVID and early-onset gastric adenocarcinoma, recurrent diarrhea, and gastrointestinal CMV infection from a retrospective survey.

conclusionPatients with IEIs should be considered at risk of early-onset GI cancers and should therefore undergo cancer screening at an earlier age.

Indexed as

Epstein-Barr Virus InfectionsGastrointestinal NeoplasmsStomach NeoplasmsHerpesvirus 4, HumanHumansImmunogeneticsRetrospective Studiesgastrointestinal cancerhuman geneticsimmunosurveillanceinborn errors of immunity

Identifiers

PMID35384041
PMCPMC9301767
OpenAlexW4224076638

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.