Evidence map›Paper›PMID 35383307›Full record

ArticleNature immunology2022

SARS-CoV-2 antigen exposure history shapes phenotypes and specificity of memory CD8

Anastasia A Minervina, Mikhail V Pogorelyy, Allison M Kirk, Jeremy Chase Crawford, E Kaitlynn Allen, Ching-Heng Chou, Robert C Mettelman, Kim J Allison, Chun-Yang Lin, David C Brice and 14 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 147 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
147citing papers in PubMed, 2 pooled it
20.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

147 citing papers in PubMed, 2 syntheses or guidelines pooled it, 206 citations in OpenAlex.

  1. Pooled it
  2. Resolving SARS-CoV-2 CD4Cell reports. Medicine · 2022
    Pooled it
  3. Article
  4. The ageing immune system and its battle with viruses.The Journal of general virology · 2026
    Review
  5. Review
  6. Article
  7. Distinct CD8iScience · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Construction of a localized immune nicheActa pharmaceutica Sinica. B · 2026
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

87 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 1 institution in 1 country.

Anastasia A Minervina *Department of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Mikhail V Pogorelyy *Department of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Allison M KirkDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-4286-3678
Jeremy Chase CrawfordDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0003-4096-6048
E Kaitlynn AllenDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-3067-751X
Ching-Heng ChouDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Robert C MettelmanDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-3527-5616
Kim J AllisonDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.
Chun-Yang LinDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-3064-0178
David C BriceDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Xun ZhuCenter for Applied Bioinformatics, St. Jude Children's Research Hospital, Memphis, TN, USA.
Kasi VegesanaInformation Services, St. Jude Children's Research Hospital, Memphis, TN, USA.
Gang WuCenter for Applied Bioinformatics, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-1678-5864
Sanchit TrivediHartwell Center for Bioinformatics & Biotechnology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0003-4266-0093
Pratibha KottapalliHartwell Center for Bioinformatics & Biotechnology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Daniel DarnellHartwell Center for Bioinformatics & Biotechnology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0003-4489-5726
Suzanne McNeelyHartwell Center for Bioinformatics & Biotechnology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Scott R OlsenHartwell Center for Bioinformatics & Biotechnology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Stacey Schultz-CherryDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-2021-727X
Jeremie H EsteppDepartment of Global Pediatric Medicine, St. Jude Children's Research Hospital, Memphis, TN, USA.
SJTRC Study Team
Maureen A McGargillDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-0916-0372
Joshua WolfDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA. joshua.wolf@stjude.org.ORCID http://orcid.org/0000-0002-9912-3646
Paul G ThomasDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA. paul.thomas@stjude.org.ORCID http://orcid.org/0000-0001-7955-0256
St. Jude Children's Research Hospital · US

Funding

NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00016 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI WEBBY, RICHARD · 2021 to 2025
$91.4M
COVID Supplement - COMPONENT A OF THE COLLABORATIVE INFLUENZA VACCINE INNOVATION CENTERS (CIVICS) PROGRAM TO DESIGN AND EVALUATE INNOVATIVE INFLUENZA VACCINE APPROACHES,75N93019C00052 · NIAID · UNIVERSITY OF GEORGIA · PI ROSS, TED · 2019 to 2025
$74.6M
Household Respiratory Virus SARS-CoV-2 Transmission and Immunity Sub-Study (HRTS)U01AI144616 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI GORDON, AUBREE L, THOMAS, PAUL G. · 2019 to 2025
$43.7M
DECODING THE INTERACTIONS BETWEEN T CELL RECEPTORS AND PEPTIDE-MHCR01AI136514 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Paul G. Thomas · 2018 to 2026
$6.9M
DYNAMICS AND EVOLUTION OF IMMUNE RESPONSES TO INFLUENZA VIRUSESU01AI150747 · NIAID · EMORY UNIVERSITY · PI AHMED, RAFI, ANTIA, RUSTOM NOSHIR · 2020 to 2024
$5.9M
NIAID NIH HHS 75N93019C00052NIAID NIH HHS 75N93021C00016NIAID NIH HHS HHSN272201400006CNIAID NIH HHS R01 AI136514NIAID NIH HHS U01 AI144616NIAID NIH HHS U01 AI150747
6 · The paper itself

Abstract

Although mRNA vaccine efficacy against severe coronavirus disease 2019 remains high, variant emergence has prompted booster immunizations. However, the effects of repeated exposures to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) antigens on memory T cells are poorly understood. Here, we utilize major histocompatibility complex multimers with single-cell RNA sequencing to profile SARS-CoV-2-responsive T cells ex vivo from humans with one, two or three antigen exposures, including vaccination, primary infection and breakthrough infection. Exposure order determined the distribution between spike-specific and non-spike-specific responses, with vaccination after infection leading to expansion of spike-specific T cells and differentiation to CCR7

Indexed as

COVID-19SARS-CoV-2CD8-Positive T-LymphocytesHumansmRNA VaccinesPhenotypeReceptors, Antigen, T-CellSpike Glycoprotein, CoronavirusVaccines, SyntheticmRNA VaccinesReceptors, Antigen, T-CellSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2Vaccines, Synthetic

Identifiers

PMID35383307
PMCPMC9106845
OpenAlexW4224249600

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.