Evidence map›Paper›PMID 35382737›Full record

ArticleBMC genomics2022

Genome-wide identification, expression analysis and evolutionary relationships of the IQ67-domain gene family in common wheat (Triticum aestivum L.) and its progenitors.

Qinglin Ke, Huifan Sun, Minqiang Tang, Ruihan Luo, Yan Zeng, Mengxing Wang, Yihan Li, Zhimin Li, Licao Cui

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Qinglin Ke *College of Bioscience and Engineering, Jiangxi Agricultural University, Jiangxi, 330045, China.
Huifan Sun *College of Bioscience and Engineering, Jiangxi Agricultural University, Jiangxi, 330045, China.
Minqiang TangCollege of Forestry, Hainan University, Hainan, 570228, China.
Ruihan LuoCollege of Bioscience and Engineering, Jiangxi Agricultural University, Jiangxi, 330045, China.
Yan ZengCollege of Bioscience and Engineering, Jiangxi Agricultural University, Jiangxi, 330045, China.
Mengxing WangCollege of Agronomy, Jiangxi Agricultural University, Jiangxi, 330045, China.
Yihan LiCollege of Bioscience and Engineering, Jiangxi Agricultural University, Jiangxi, 330045, China.
Zhimin LiCollege of Bioscience and Engineering, Jiangxi Agricultural University, Jiangxi, 330045, China.
Licao CuiCollege of Bioscience and Engineering, Jiangxi Agricultural University, Jiangxi, 330045, China. cuilicao@jxau.edu.cn.
Jiangxi Agricultural University · CNChinese Academy of Agricultural Sciences · CNHainan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe plant-specific IQ67-domain (IQD) gene family plays an important role in plant development and stress responses. However, little is known about the IQD family in common wheat (Triticum aestivum L), an agriculturally important crop that provides more than 20% of the calories and protein consumed in the modern human diet.

resultsWe identified 125 IQDs in the wheat genome and divided them into four subgroups by phylogenetic analysis. The IQDs belonging to the same subgroup had similar exon-intron structure and conserved motif composition. Polyploidization contributed significantly to the expansion of IQD genes in wheat. Characterization of the expression profile of these genes revealed that a few T. aestivum (Ta)IQDs showed high tissue-specificity. The stress-induced expression pattern also revealed a potential role of TaIQDs in environmental adaptation, as TaIQD-2A-2, TaIQD-3A-9 and TaIQD-1A-7 were significantly induced by cold, drought and heat stresses, and could be candidates for future functional characterization. In addition, IQD genes in the A, B and D subgenomes displayed an asymmetric evolutionary pattern, as evidenced by their different gain or loss of member genes, expression levels and nucleotide diversity.

conclusionsThis study elucidated the potential biological functions and evolutionary relationships of the IQD gene family in wheat and revealed the divergent fates of IQD genes during polyploidization.

Indexed as

Genome, PlantMultigene FamilyPlant ProteinsTriticumGene Expression Regulation, PlantPhylogenyStress, PhysiologicalPlant ProteinsAsymmetric evolutionExpression profilesIQD gene familyPolyploidizationWheat

Identifiers

PMID35382737
PMCPMC8981769
OpenAlexW4225574997

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.