Evidence map›Paper›PMID 35382035›Full record

ArticleBiophysical reports2021

A mean shift algorithm for drift correction in localization microscopy.

Frank J Fazekas, Thomas R Shaw, Sumin Kim, Ryan A Bogucki, Sarah L Veatch

Abstract read
In one paragraph

Article in Biophysical reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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  16. Biophysical reports · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Frank J FazekasProgram in Biophysics, University of Michigan, Ann Arbor, Michigan.
Thomas R ShawProgram in Biophysics, University of Michigan, Ann Arbor, Michigan.
Sumin KimCellular and Molecular Biology Graduate Program, University of Michigan, Ann Arbor, Michigan.
Ryan A BoguckiProgram in Biophysics, University of Michigan, Ann Arbor, Michigan.
Sarah L VeatchProgram in Biophysics, University of Michigan, Ann Arbor, Michigan.

Funding

Ion channel regulation by heterogeneous membranesR01GM110052 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI VEATCH, SARAH L · 2014 to 2022
$2.9M
Ion channel regulation by heterogeneous membranesR01GM129347 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI VEATCH, SARAH L · 2019 to 2022
$1.1M
NIGMS NIH HHS R01 GM110052NIGMS NIH HHS R01 GM129347
6 · The paper itself

Abstract

Single-molecule localization microscopy techniques transcend the diffraction limit of visible light by localizing isolated emitters sampled stochastically. This time-lapse imaging necessitates long acquisition times, over which sample drift can become large relative to the localization precision. Here, we present an efficient and robust method for estimating drift, using a simple peak-finding algorithm based on mean shifts that is effective for single-molecule localization microscopy in two or three dimensions.

Identifiers

PMID35382035
PMCPMC8978553

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.