Evidence map›Paper›PMID 35381041›Full record

ArticlePloS one2022

An ensemble of parameters from a robust Markov-based model reproduces L-type calcium currents from different human cardiac myocytes.

Gustavo Montes Novaes, Enrique Alvarez-Lacalle, Sergio Alonso Muñoz, Rodrigo Weber Dos Santos

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In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Gustavo Montes NovaesGraduate Program in Computational Modeling, Federal University of Juiz de Fora, Juiz de Fora, MG, Brazil.ORCID 0000-0002-1484-5093
Enrique Alvarez-LacalleDepartment of Physics, Universitat Politècnica de Catalunya-BarcelonaTech, Barcelona, Spain.
Sergio Alonso MuñozDepartment of Physics, Universitat Politècnica de Catalunya-BarcelonaTech, Barcelona, Spain.ORCID 0000-0002-3989-8757
Rodrigo Weber Dos SantosGraduate Program in Computational Modeling, Federal University of Juiz de Fora, Juiz de Fora, MG, Brazil.ORCID 0000-0002-0633-1391

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The development of modeling structures at the channel level that can integrate subcellular and cell models and properly reproduce different experimental data is of utmost importance in cardiac electrophysiology. In contrast to gate-based models, Markov Chain models are well suited to promote the integration of the subcellular level of the cardiomyocyte to the whole cell. In this paper, we develop Markov Chain models for the L-type Calcium current that can reproduce the electrophysiology of two established human models for the ventricular and Purkinje cells. In addition, instead of presenting a single set of parameters, we present a collection of set of parameters employing Differential Evolution algorithms that can properly reproduce very different protocol data. We show the importance of using an ensemble of a set of parameter values to obtain proper results when considering a second protocol that suppresses calcium inactivation and mimics a pathological condition. We discuss how model discrepancy, data availability, and parameter identifiability can influence the choice of the size of the collection. In summary, we have modified two cardiac models by proposing new Markov Chain models for the L-type Calcium. We keep the original whole-cell dynamics by reproducing the same characteristic action potential and calcium dynamics, whereas the Markov chain-based description of the L-type Calcium channels allows novel small spatial scale simulations of subcellular processes. Finally, the use of collections of parameters was crucial for addressing model discrepancy, identifiability issues, and avoiding fitting parameters overly precisely, i.e., overfitting.

Indexed as

CalciumCalcium Channels, L-TypeMyocytes, CardiacAction PotentialsHumansMarkov ChainsCalciumCalcium Channels, L-Type

Identifiers

PMID35381041
PMCPMC8982880

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.