Evidence map›Paper›PMID 35379835›Full record

ArticleScientific reports2022

Improved fluorescent phytochromes for in situ imaging.

Soshichiro Nagano, Maryam Sadeghi, Jens Balke, Moritz Fleck, Nina Heckmann, Georgios Psakis, Ulrike Alexiev

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Circular dichroism spectroscopy reveals multiple phytochrome photoproducts in equilibrium.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Outstanding women scientists who have broadened the knowledge on biological photoreceptors-II.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2024
    Article
  7. Visualization of Nanocarriers and Drugs in Cells and Tissue.Handbook of experimental pharmacology · 2024
    Article
  8. Article
  9. Review
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  11. Article
  12. Conserved histidine and tyrosine determine spectral responses through the water network in Deinococcus radiodurans phytochrome.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Soshichiro Nagano *Institut Für Pflanzenphysiologie, Justus-Liebig-Universität, 35390, Giessen, Germany.
Maryam Sadeghi *Institut Für Experimentalphysik, Freie Universität Berlin, 14195, Berlin, Germany.
Jens BalkeInstitut Für Experimentalphysik, Freie Universität Berlin, 14195, Berlin, Germany.
Moritz FleckInstitut Für Pflanzenphysiologie, Justus-Liebig-Universität, 35390, Giessen, Germany.
Nina HeckmannInstitut Für Pflanzenphysiologie, Justus-Liebig-Universität, 35390, Giessen, Germany.
Georgios PsakisInstitut Für Pflanzenphysiologie, Justus-Liebig-Universität, 35390, Giessen, Germany.
Ulrike AlexievInstitut Für Experimentalphysik, Freie Universität Berlin, 14195, Berlin, Germany. ulrike.alexiev@fu-berlin.de.
University of Giessen · DEFreie Universität Berlin · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Modern biology investigations on phytochromes as near-infrared fluorescent pigments pave the way for the development of new biosensors, as well as for optogenetics and in vivo imaging tools. Recently, near-infrared fluorescent proteins (NIR-FPs) engineered from biliverdin-binding bacteriophytochromes and cyanobacteriochromes, and from phycocyanobilin-binding cyanobacterial phytochromes have become promising probes for fluorescence microscopy and in vivo imaging. However, current NIR-FPs typically suffer from low fluorescence quantum yields and short fluorescence lifetimes. Here, we applied the rational approach of combining mutations known to enhance fluorescence in the cyanobacterial phytochrome Cph1 to derive a series of highly fluorescent variants with fluorescence quantum yield exceeding 15%. These variants were characterised by biochemical and spectroscopic methods, including time-resolved fluorescence spectroscopy. We show that these new NIR-FPs exhibit high fluorescence quantum yields and long fluorescence lifetimes, contributing to their bright fluorescence, and provide fluorescence lifetime imaging measurements in E.coli cells.

Indexed as

PhytochromeBacterial ProteinsBiliverdineLuminescent ProteinsMicroscopy, FluorescenceBacterial ProteinsBiliverdineLuminescent ProteinsPhytochrome

Identifiers

PMID35379835
PMCPMC8980088
OpenAlexW4225539060

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.