Evidence map›Paper›PMID 35377868›Full record

ArticlePLoS computational biology2022

Understanding photosynthetic biofilm productivity and structure through 2D simulation.

Bastien Polizzi, Andrea Fanesi, Filipa Lopes, Magali Ribot, Olivier Bernard

Abstract read
In one paragraph

Article in PLoS computational biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Growing Algae in Biofilms: Principles and Emerging Opportunities.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Bastien PolizziLaboratoire de Mathématiques de Besançon, Université Bourgogne Franche-Comté, CNRS UMR-6623, Besançon, France.ORCID 0000-0003-0535-1443
Andrea FanesiLGPM, CentraleSupélec, Université Paris Saclay, Gif-sur-Yvette, France.ORCID 0000-0003-1410-3169
Filipa LopesLGPM, CentraleSupélec, Université Paris Saclay, Gif-sur-Yvette, France.
Magali RibotIDP, Université d'Orléans, CNRS, UMR CNRS 7013, Orléans, France.ORCID 0000-0001-7578-5146
Olivier BernardUniversité Côte d'Azur, INRIA, INRAE, CNRS, Sorbonne Université, BIOCORE, France.ORCID 0000-0003-2539-9014

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present a spatial model describing the growth of a photosynthetic microalgae biofilm. In this 2D-model we consider photosynthesis, cell carbon accumulation, extracellular matrix excretion, and mortality. The rate of each of these mechanisms is given by kinetic laws regulated by light, nitrate, oxygen and inorganic carbon. The model is based on mixture theory and the behaviour of each component is defined on one hand by mass conservation, which takes into account biological features of the system, and on the other hand by conservation of momentum, which expresses the physical properties of the components. The model simulates the biofilm structural dynamics following an initial colonization phase. It shows that a 75 μm thick active region drives the biofilm development. We then determine the optimal harvesting period and biofilm height which maximize productivity. Finally, different harvesting patterns are tested and their effect on biofilm structure are discussed. The optimal strategy differs whether the objective is to recover the total biofilm or just the algal biomass.

Indexed as

MicroalgaePhotosynthesisBiofilmsCarbonComputer SimulationCarbon

Identifiers

PMID35377868
PMCPMC9037940

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.