Evidence map›Paper›PMID 35377806›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Cellular and transcriptional diversity over the course of human lactation.

Sarah K Nyquist, Patricia Gao, Tessa K J Haining, Michael R Retchin, Yarden Golan, Riley S Drake, Kellie Kolb, Benjamin E Mead, Nadav Ahituv, Micaela E Martinez and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
8.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 63 citations in OpenAlex.

  1. Review
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  7. Methods for Preserving Human Milk Cellular and Milk Fat Globule RNA.Journal of mammary gland biology and neoplasia · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Sarah K NyquistBroad Institute of MIT and Harvard, Cambridge, MA 02142.
Patricia GaoDepartment of Chemistry and Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA 02139.
Tessa K J HainingDepartment of Chemistry and Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA 02139.
Michael R RetchinDepartment of Chemistry and Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA 02139.
Yarden GolanDepartment of Bioengineering and Therapeutic Sciences, Institute for Human Genetics, University of California, San Francisco, CA 94143.
Riley S DrakeBroad Institute of MIT and Harvard, Cambridge, MA 02142.
Kellie KolbBroad Institute of MIT and Harvard, Cambridge, MA 02142.
Benjamin E MeadBroad Institute of MIT and Harvard, Cambridge, MA 02142.
Nadav AhituvDepartment of Bioengineering and Therapeutic Sciences, Institute for Human Genetics, University of California, San Francisco, CA 94143.ORCID 0000-0002-7434-8144
Micaela E MartinezDepartment of Biology, Emory University, Atlanta, GA 30322.
Alex K ShalekBroad Institute of MIT and Harvard, Cambridge, MA 02142.ORCID 0000-0001-5670-8778
Bonnie BergerBroad Institute of MIT and Harvard, Cambridge, MA 02142.
Brittany A GoodsThayer School of Engineering, Program in Quantitative Biomedical Sciences, Dartmouth College, Hanover, NH 03755.
Broad Institute · USMassachusetts Institute of Technology · USQB3 · USDartmouth College · USEmory University · US

Funding

VIRUS PRODUCTION COREP30CA014051 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Darrell J Irvine · 1985 to 2026
$93.9M
Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI VAISSE, CHRISTIAN · 2003 to 2019
$21.8M
Graduate Training in Computational and Systems BiologyT32GM087237 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BURGE, CHRISTOPHER B · 2009 to 2023
$4.6M
Privacy-preserving genomic medicine at scaleR01HG010959 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BERGER, BONNIE · 2020 to 2023
$2.6M
HACKING EPIDEMICS: UNLOCKING THE DRIVERS OF TRANSMISSION SEASONALITYTO BATTLE VACCINE-PREVENTABLE DISEASESDP5OD023100 · OD · PRINCETON UNIVERSITY · PI MARTINEZ, MICAELA ELVIRA · 2016 to 2020
$1.8M
Characterizing spatio-temporal changes in immune cell landscapes of multiple sclerosis patients in response to B cell depletion with OcrelizumabF32AI136459 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GOODS, BRITTANY ANNE · 2018 to 2020
$184k
NCI NIH HHS P30 CA014051NHGRI NIH HHS R01 HG010959NIAID NIH HHS F32 AI136459NIDDK NIH HHS P30 DK063720NIGMS NIH HHS T32 GM087237NIH HHS DP5 OD023100NIH HHS F32-AI136459NIH HHS P30-CA14051
6 · The paper itself

Abstract

Human breast milk (hBM) is a dynamic fluid that contains millions of cells, but their identities and phenotypic properties are poorly understood. We generated and analyzed single-cell RNA-sequencing (scRNA-seq) data to characterize the transcriptomes of cells from hBM across lactational time from 3 to 632 d postpartum in 15 donors. We found that the majority of cells in hBM are lactocytes, a specialized epithelial subset, and that cell-type frequencies shift over the course of lactation, yielding greater epithelial diversity at later points. Analysis of lactocytes reveals a continuum of cell states characterized by transcriptional changes in hormone-, growth factor-, and milk production-related pathways. Generalized additive models suggest that one subcluster, LC1 epithelial cells, increases as a function of time postpartum, daycare attendance, and the use of hormonal birth control. We identify several subclusters of macrophages in hBM that are enriched for tolerogenic functions, possibly playing a role in protecting the mammary gland during lactation. Our description of the cellular components of breast milk, their association with maternal–infant dyad metadata, and our quantification of alterations at the gene and pathway levels provide a detailed longitudinal picture of hBM cells across lactational time. This work paves the way for future investigations of how a potential division of cellular labor and differential hormone regulation might be leveraged therapeutically to support healthy lactation and potentially aid in milk production.

Indexed as

LactationMilk, HumanBreast FeedingFemaleGene Expression ProfilingHumansRNA-SeqTranscriptomebreast milkmacrophagemammary epithelial cellmaternal healthsingle-cell RNA-sequencing

Identifiers

PMID35377806
PMCPMC9169737
OpenAlexW4226298044

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.