ArticleNAR genomics and bioinformatics2022
Graph-based models of the
Article in NAR genomics and bioinformatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
19 citing papers in PubMed, 34 citations in OpenAlex.
- Comparative analysis of the complete multi-chromosomal mitogenome of an antitussive herb Fritillaria unibracteata.BMC genomics · 2026Article
- Structural characterization of the plastid genome and comparative mitochondrial genomics of Eupatorium lindleyanum (Asteraceae): evolutionary dynamics and phylogenetic insights.BMC plant biology · 2026Article
- Assembly and comparative analysis of the complete multichromosomal mitochondrial genome of an endangered orchid species,Frontiers in plant science · 2026Article
- Assembly and characterization of the complete mitochondrial genome ofFrontiers in plant science · 2026Article
- Advance in the assembly of the plant mitochondrial genomes using high-throughput DNA sequencing data of total cellular DNAs.Plant biotechnology journal · 2025Review
- Pan-mitogenome in Dipterocarpoideae: mitochondrial plastid DNAs and repeats shape the dynamic evolution of mitogenomes.BMC plant biology · 2025Article
- Mitochondrial genome of Quercus chenii: genomic features and evolutionary implications.BMC genomics · 2025Article
- The characterisation of the complete mitochondrial genome of Polygonatum Kingianum reveals recombination mediated by repeats associated with DNA replication.Scientific reports · 2025Article
- Article
- De novo assembly of the complete mitochondrial genomes of two Camellia-oil tree species reveals their multibranch conformation and evolutionary relationships.Scientific reports · 2025Article
- De Novo Hybrid Assembly Unveils Multi-Chromosomal Mitochondrial Genomes inInternational journal of molecular sciences · 2024Article
- Article
- The complete mitochondrial genome ofFrontiers in plant science · 2024Article
- Plasticity of repetitive sequences demonstrated by the complete mitochondrial genome ofFrontiers in plant science · 2024Article
- Assembly and comparative analysis of the complete mitochondrial genome of Viburnum chinshanense.BMC plant biology · 2023Article
- The mitochondrial genome of the diploid oat Avena longiglumis.BMC plant biology · 2023Article
- Characterization and phylogenetic analysis of the complete mitochondrial genome sequence of Photinia serratifolia.Scientific reports · 2023Article
- Assembly and analysis of the complete mitochondrial genome of the Chinese wild dwarf almond (Frontiers in genetics · 2023Article
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Plant mitochondrial genomes display an enormous structural complexity, as recombining repeat-pairs lead to the generation of various sub-genomic molecules, rendering these genomes extremely challenging to assemble. We present a novel bioinformatic data-processing pipeline called SAGBAC (Semi-Automated Graph-Based Assembly Curator) that identifies recombinogenic repeat-pairs and reconstructs plant mitochondrial genomes. SAGBAC processes assembly outputs and applies our novel ISEIS (Iterative Sequence Ends Identity Search) algorithm to obtain a graph-based visualization. We applied this approach to three mitochondrial genomes of evening primrose (
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.