Evidence map›Paper›PMID 35369361›Full record

ArticleIn silico plants2022

Modelling of plant circadian clock for characterizing hypocotyl growth under different light quality conditions.

Miao Lin Pay, Dae Wook Kim, David E Somers, Jae Kyoung Kim, Mathias Foo

Open access · goldAbstract read
In one paragraph

Article in In silico plants, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. The art of modeling gene regulatory circuits.NPJ systems biology and applications · 2024
    Article
  4. The circadian clock of the bacteriumScience advances · 2023
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 3 countries.

Miao Lin PayInstitute for Future Transport and Cities, Coventry University, Coventry CV1 2TE, UK.
Dae Wook KimDepartment of Mathematical Sciences, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea.
David E SomersDepartment of Molecular Genetics, The Ohio State University, Columbus, OH 43210, USA.
Jae Kyoung KimDepartment of Mathematical Sciences, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea.ORCID https://orcid.org/0000-0001-7842-2172
Mathias FooSchool of Engineering, University of Warwick, Coventry CV4 7AL, UK.ORCID https://orcid.org/0000-0003-1400-2659
Korea Advanced Institute of Science and Technology · KRCoventry University · GBThe Ohio State University · USUniversity of Warwick · GB

Funding

Inter- and intracellular mechanisms of circadian regulationR35GM136400 · NIGMS · OHIO STATE UNIVERSITY · PI SOMERS, DAVID E · 2020 to 2024
$1.9M
NIGMS NIH HHS R35 GM136400
6 · The paper itself

Abstract

To meet the ever-increasing global food demand, the food production rate needs to be increased significantly in the near future. Speed breeding is considered as a promising agricultural technology solution to achieve the zero-hunger vision as specified in the United Nations Sustainable Development Goal 2. In speed breeding, the photoperiod of the artificial light has been manipulated to enhance crop productivity. In particular, regulating the photoperiod of different light qualities rather than solely white light can further improve speed breading. However, identifying the optimal light quality and the associated photoperiod simultaneously remains a challenging open problem due to complex interactions between multiple photoreceptors and proteins controlling plant growth. To tackle this, we develop a first comprehensive model describing the profound effect of multiple light qualities with different photoperiods on plant growth (i.e. hypocotyl growth). The model predicts that hypocotyls elongated more under red light compared to both red and blue light. Drawing similar findings from previous related studies, we propose that this might result from the competitive binding of red and blue light receptors, primarily Phytochrome B (phyB) and Cryptochrome 1 (cry1) for the core photomorphogenic regulator, CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1). This prediction is validated through an experimental study on

Indexed as

Arabidopsis thalianacompetitive bindinghypocotyl growthlight qualitiesphotoperiodic growthplant circadian system

Identifiers

PMID35369361
PMCPMC8963510
OpenAlexW4210946667

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.