Evidence map›Paper›PMID 35368676›Full record

ArticleFrontiers in genetics2022

Beyond Genes: Inclusion of Alternative Splicing and Alternative Polyadenylation to Assess the Genetic Architecture of Predisposition to Voluntary Alcohol Consumption in Brain of the HXB/BXH Recombinant Inbred Rat Panel.

Ryan Lusk, Paula L Hoffman, Spencer Mahaffey, Samuel Rosean, Harry Smith, Jan Silhavy, Michal Pravenec, Boris Tabakoff, Laura M Saba

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Ryan LuskDepartment of Pharmaceutical Sciences, University of Colorado Anschutz Medical Campus, Aurora, CO, United States.
Paula L HoffmanDepartment of Pharmacology, University of Colorado Anschutz Medical Campus, Aurora, CO, United States.
Spencer MahaffeyDepartment of Pharmaceutical Sciences, University of Colorado Anschutz Medical Campus, Aurora, CO, United States.
Samuel RoseanDepartment of Pharmaceutical Sciences, University of Colorado Anschutz Medical Campus, Aurora, CO, United States.
Harry SmithDepartment of Pharmaceutical Sciences, University of Colorado Anschutz Medical Campus, Aurora, CO, United States.
Jan SilhavyInstitute of Physiology of the Czech Academy of Sciences, Prague, Czechia.
Michal PravenecInstitute of Physiology of the Czech Academy of Sciences, Prague, Czechia.
Boris TabakoffDepartment of Pharmaceutical Sciences, University of Colorado Anschutz Medical Campus, Aurora, CO, United States.
Laura M SabaDepartment of Pharmaceutical Sciences, University of Colorado Anschutz Medical Campus, Aurora, CO, United States.
University of Colorado Anschutz Medical Campus · USCzech Academy of Sciences, Institute of Physiology · CZ

Funding

The Heritable Transcriptome and AlcoholismR24AA013162 · NIAAA · UNIVERSITY OF COLORADO DENVER · PI HOFFMAN, PAULA, SABA, LAURA MAREN · 2001 to 2021
$14.2M
TIM Project NIDA P30 CenterP30DA044223 · NIDA · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI SABA, LAURA MAREN · 2017 to 2021
$3.9M
NIAAA NIH HHS R24 AA013162NIDA NIH HHS P30 DA044223
6 · The paper itself

Abstract

Post transcriptional modifications of RNA are powerful mechanisms by which eukaryotes expand their genetic diversity. For instance, researchers estimate that most transcripts in humans undergo alternative splicing and alternative polyadenylation. These splicing events produce distinct RNA molecules, which in turn yield distinct protein isoforms and/or influence RNA stability, translation, nuclear export, and RNA/protein cellular localization. Due to their pervasiveness and impact, we hypothesized that alternative splicing and alternative polyadenylation in brain can contribute to a predisposition for voluntary alcohol consumption. Using the HXB/BXH recombinant inbred rat panel (a subset of the Hybrid Rat Diversity Panel), we generated over one terabyte of brain RNA sequencing data (total RNA) and identified novel splice variants (

Indexed as

alternative polyadenylationalternative splicingHXB/BXH recombinant inbred panelisoformRNA-seq—RNA sequencingtranscriptomevoluntary alcohol consumptionweighted gene co expression network analysis

Identifiers

PMID35368676
PMCPMC8965255
OpenAlexW4220822981

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.