Evidence map›Paper›PMID 35366687›Full record

ArticleFunctional & integrative genomics2022

Proteomic analysis of coarse and fine skin tissues of Liaoning cashmere goat.

Zhixian Bai, Yanan Xu, Ming Gu, Weidong Cai, Yu Zhang, Yuting Qin, Rui Chen, Yinggang Sun, Yanzhi Wu, Zeying Wang

Abstract read
PubMed Publisher
In one paragraph

Article in Functional & integrative genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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  5. Association analysis for SNPs ofAnimal biotechnology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Zhixian BaiCollege of Animal Science &Veterinary Medicine, Shenyang Agricultural University, Shenyang, 110866, China.ORCID http://orcid.org/0000-0002-9775-4444
Yanan XuCollege of Animal Science &Veterinary Medicine, Shenyang Agricultural University, Shenyang, 110866, China.
Ming GuCollege of Animal Science &Veterinary Medicine, Shenyang Agricultural University, Shenyang, 110866, China.
Weidong CaiCollege of Animal Science &Veterinary Medicine, Shenyang Agricultural University, Shenyang, 110866, China.
Yu ZhangCollege of Animal Science &Veterinary Medicine, Shenyang Agricultural University, Shenyang, 110866, China.
Yuting QinCollege of Animal Science &Veterinary Medicine, Shenyang Agricultural University, Shenyang, 110866, China.
Rui ChenCollege of Animal Science &Veterinary Medicine, Shenyang Agricultural University, Shenyang, 110866, China.
Yinggang SunCollege of Animal Science &Veterinary Medicine, Shenyang Agricultural University, Shenyang, 110866, China.
Yanzhi WuCollege of Animal Science &Veterinary Medicine, Shenyang Agricultural University, Shenyang, 110866, China.
Zeying WangCollege of Animal Science &Veterinary Medicine, Shenyang Agricultural University, Shenyang, 110866, China. wangzeying2012@syau.edu.cn.
Shenyang Agricultural University · CN

Funding

2021 Liaoning Province " the open competition mechanism to select the best candidates" Science and Technology Research Project: Selection and breeding of special advantageous livestock and poultry breeds in Liaoning and key technology of whole industry cha No. 2021JH1/10400033National modern agricultural industrial technology system, project number cars-39-27the Grants from Postdoctoral Science Foundation of China: Genetic trajectory and expression localization of key genes of cashmere fineness by multi-omics No. 2021M693859
6 · The paper itself

Abstract

Proteomics is the study of all proteins expressed by a cell or even an organism. However, knowledge of proteins that regulate the fineness of cashmere is limited. Liaoning cashmere goat (LCG) is a valuable genetic resource of China. The skin samples of Liaoning cashmere goats during the growing period were collected, performed tandem mass tag (TMT) method, and identified 117 differentially expressed proteins in CT_LCG (course type) and FT_LCG (fine type). To verify proteins differentially expressed in LCG, we performed PRM validation on three candidate proteins (ALB, SDC1, and ITGB4) in CT-LCG and FT-LCG. Furthermore, primary metabolic process and lysosome are most enriched in the GO and KEGG pathways, respectively. In addition, we also derived a protein-protein interaction (PPI) regulatory network from the perspective of bioinformatics. This study sought to elucidate the molecular mechanism of differential proteins regulating cashmere fineness of Liaoning cashmere goats by using TMT quantitative proteomics analysis. Differentially expressed proteins ALB and SDC1 may regulate cashmere fineness; ITGB4 can become a promising protein for further study. They can be used as key proteins to lay a foundation for studying cashmere fineness of Liaoning cashmere goats.

Indexed as

GoatsProteomicsAnimalsChinaComputational BiologySkinCashmere finenessDifferentially expressed proteinsPRMProteomicsTMT

Identifiers

PMID35366687
OpenAlexW4225837329

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.