Evidence map›Paper›PMID 35365663›Full record

ArticleNature communications2022

Quantitative phosphoproteomic analyses identify STK11IP as a lysosome-specific substrate of mTORC1 that regulates lysosomal acidification.

Zhenzhen Zi, Zhuzhen Zhang, Qiang Feng, Chiho Kim, Xu-Dong Wang, Philipp E Scherer, Jinming Gao, Beth Levine, Yonghao Yu

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
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  8. [Progress in enrichment methods for proteinSe pu = Chinese journal of chromatography · 2024
    Review
  9. Defective Lamtor5 Leads to Autoimmunity by Deregulating v-ATPase and Lysosomal Acidification.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  10. Article
  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Zhenzhen ZiDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Zhuzhen ZhangTouchstone Diabetes Center, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Qiang FengHarold C. Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Chiho KimDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.ORCID http://orcid.org/0000-0001-6846-5515
Xu-Dong WangDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Philipp E SchererTouchstone Diabetes Center, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.ORCID http://orcid.org/0000-0003-0680-3392
Jinming GaoHarold C. Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.ORCID http://orcid.org/0000-0003-0726-5098
Beth LevineHoward Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Yonghao YuDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA. Yonghao.Yu@UTsouthwestern.edu.ORCID http://orcid.org/0000-0001-8414-4666
The University of Texas Southwestern Medical Center · USHoward Hughes Medical Institute · USSouthwestern Medical Center · US

Funding

Posttranslational Regulation of Cell Growth and Stress ResponsesR35GM134883 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI YU, YONGHAO · 2020 to 2024
$2.7M
A Chemical Footprinting Approach towards Poly-ADP-Ribosylation-regulated Biomolecular CondensationR01NS122533 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI Yonghao Yu · 2022 to 2026
$2.0M
Laser Scanning Confocal for UT Southwestern Live Cell Imaging FacilityS10OD021684 · OD · UT SOUTHWESTERN MEDICAL CENTER · PI LUBY-PHELPS, KATHERINE J · 2016 to 2016
$455k
Site-Specific Antibody for Protein Poly-ADP-RibosylationR21CA261018 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI YU, YONGHAO · 2021 to 2021
$421k
NCI NIH HHS R21 CA261018NIGMS NIH HHS R35 GM134883NIH HHS S10 OD021684NINDS NIH HHS R01 NS122533
6 · The paper itself

Abstract

The evolutionarily conserved serine/threonine kinase mTORC1 is a central regulator of cell growth and proliferation. mTORC1 is activated on the lysosome surface. However, once mTORC1 is activated, it is unclear whether mTORC1 phosphorylates local lysosomal proteins to regulate specific aspects of lysosomal biology. Through cross-reference analyses of the lysosome proteome with the mTORC1-regulated phosphoproteome, we identify STK11IP as a lysosome-specific substrate of mTORC1. mTORC1 phosphorylates STK11IP at Ser

Indexed as

Multiprotein ComplexesTOR Serine-Threonine KinasesAdaptor Proteins, Signal TransducingAnimalsHydrogen-Ion ConcentrationLysosomesMechanistic Target of Rapamycin Complex 1MiceMice, KnockoutAdaptor Proteins, Signal TransducingMechanistic Target of Rapamycin Complex 1Multiprotein ComplexesStk11ip protein, mouseTOR Serine-Threonine Kinases

Identifiers

PMID35365663
PMCPMC8976005
OpenAlexW4225977640

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.