Evidence map›Paper›PMID 35365626›Full record

ArticleNature communications2022

USP1-trapping lesions as a source of DNA replication stress and genomic instability.

Kate E Coleman, Yandong Yin, Sarah Kit Leng Lui, Sarah Keegan, David Fenyo, Duncan J Smith, Eli Rothenberg, Tony T Huang

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 50 citations in OpenAlex.

  1. GLS1 Orchestrates Exosome-Mediated Tumor-Endothelial Communication to Facilitate Angiogenesis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Kate E Coleman *Department of Biochemistry & Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.
Yandong Yin *Department of Biochemistry & Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.
Sarah Kit Leng LuiDepartment of Biochemistry & Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.
Sarah KeeganDepartment of Biochemistry & Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.
David FenyoDepartment of Biochemistry & Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0001-5049-3825
Duncan J SmithDepartment of Biology, New York University, New York, NY, USA.ORCID http://orcid.org/0000-0002-0898-8629
Eli RothenbergDepartment of Biochemistry & Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.
Tony T HuangDepartment of Biochemistry & Molecular Pharmacology, New York University School of Medicine, New York, NY, USA. tony.huang@nyumc.org.ORCID http://orcid.org/0000-0001-9291-5002
New York University · USShenzhen Bay Laboratory · CN

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ANIRBAN MAITRA · 1985 to 2026
$83.1M
Structural determinants of Pol theta functionP01CA247773 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DALE A RAMSDEN · 2020 to 2026
$15.2M
Mapping transient interactions with and on genomic DNAR35GM134918 · NIGMS · NEW YORK UNIVERSITY · PI Duncan J Smith · 2020 to 2026
$4.2M
Mechanisms of Human DNA Double-Strand Break Repair via Quantitative Single-Molecule Imaging - Equipment SupplementR35GM134947 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Eli Rothenberg · 2020 to 2026
$3.4M
Mechanism and Fidelity of RAG mediated DNA recombinationR01AI153040 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ROTHENBERG, ELI · 2020 to 2024
$2.7M
Understanding the mechanistic role of genome stability pathways in regulating cell homeostasisR35GM139610 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Tony Tung Huang · 2021 to 2026
$2.6M
Mechanisms of reversible DUB oxidation in genome stability pathways - RevisionR01ES025166 · NIEHS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI HUANG, TONY TUNG · 2015 to 2020
$2.3M
Defining the molecular basis of oncogene-induced replication stressR01ES031658 · NIEHS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI HUANG, TONY TUNG · 2021 to 2025
$2.2M
NCI NIH HHS P01 CA247773NCI NIH HHS P30 CA016087NIAID NIH HHS R01 AI153040NIEHS NIH HHS R01 ES025166NIEHS NIH HHS R01 ES031658NIGMS NIH HHS R35 GM134918NIGMS NIH HHS R35 GM134947NIGMS NIH HHS R35 GM139610
6 · The paper itself

Abstract

The deubiquitinase USP1 is a critical regulator of genome integrity through the deubiquitylation of Fanconi Anemia proteins and the DNA replication processivity factor, proliferating cell nuclear antigen (PCNA). Uniquely, following UV irradiation, USP1 self-inactivates through autocleavage, which enables its own degradation and in turn, upregulates PCNA monoubiquitylation. However, the functional role for this autocleavage event during physiological conditions remains elusive. Herein, we discover that cells harboring an autocleavage-defective USP1 mutant, while still able to robustly deubiquitylate PCNA, experience more replication fork-stalling and premature fork termination events. Using super-resolution microscopy and live-cell single-molecule tracking, we show that these defects are related to the inability of this USP1 mutant to be properly recycled from sites of active DNA synthesis, resulting in replication-associated lesions. Furthermore, we find that the removal of USP1 molecules from DNA is facilitated by the DNA-dependent metalloprotease Spartan to counteract the cytotoxicity caused by "USP1-trapping". We propose a utility of USP1 inhibitors in cancer therapy based on their ability to induce USP1-trapping lesions and consequent replication stress and genomic instability in cancer cells, similar to how non-covalent DNA-protein crosslinks cause cytotoxicity by imposing steric hindrances upon proteins involved in DNA transactions.

Indexed as

Genomic InstabilityUbiquitin-Specific ProteasesDNA DamageDNA ReplicationHumansUbiquitinationUbiquitin-Specific ProteasesUSP1 protein, human

Identifiers

PMID35365626
PMCPMC8975806
OpenAlexW4221069222

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.