Evidence map›Paper›PMID 35361990›Full record

ArticleNature chemical biology2022

Structural basis for inhibition of the drug efflux pump NorA from Staphylococcus aureus.

Douglas N Brawley, David B Sauer, Jianping Li, Xuhui Zheng, Akiko Koide, Ganesh S Jedhe, Tiffany Suwatthee, Jinmei Song, Zheng Liu, Paramjit S Arora and 4 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 80 citations in OpenAlex.

  1. IntegratedACS omega · 2026
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  8. Screening ofFrontiers in microbiology · 2026
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  11. Energetic and structural control of polyspecificity in a multidrug transporter.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  16. Evaluation of the Activity of Amino Chalcone AgainstPharmaceuticals (Basel, Switzerland) · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

Douglas N BrawleySkirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY, USA.
David B Sauer *Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY, USA.
Jianping Li *Department of Chemistry, New York University, New York, NY, USA.
Xuhui Zheng *Department of Microbiology, New York University School of Medicine, New York, NY, USA.
Akiko Koide *Perlmutter Cancer Center, New York University School of Medicine, New York, NY, USA.
Ganesh S JedheDepartment of Chemistry, New York University, New York, NY, USA.ORCID http://orcid.org/0000-0001-7404-3677
Tiffany SuwattheeDepartment of Chemistry, New York University, New York, NY, USA.
Jinmei SongSkirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY, USA.
Zheng LiuCryo-Electron Microscopy Facility, New York University School of Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0002-3538-9349
Paramjit S AroraDepartment of Chemistry, New York University, New York, NY, USA.
Shohei KoidePerlmutter Cancer Center, New York University School of Medicine, New York, NY, USA. shohei.koide@nyulangone.org.ORCID http://orcid.org/0000-0001-5473-4358
Victor J TorresDepartment of Microbiology, New York University School of Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0002-7126-0489
Da-Neng WangSkirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY, USA. da-neng.wang@med.nyu.edu.ORCID http://orcid.org/0000-0002-6496-4699
Nathaniel J TraasethDepartment of Chemistry, New York University, New York, NY, USA. traaseth@nyu.edu.ORCID http://orcid.org/0000-0002-1185-6088
New York University · USChinese University of Hong Kong, Shenzhen · CNUniversity of Oxford · GB

Funding

Mechanistic Studies Of The Staphylococcus aureus LukAB CytotoxinR01AI099394 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Victor J. Torres · 2013 to 2026
$6.1M
Protein Domain Mimics as Modulators of Biomolecular InteractionsR35GM130333 · NIGMS · NEW YORK UNIVERSITY · PI Paramjit S Arora · 2019 to 2026
$6.0M
Mechanisms of Allostery and Molecular Recognition in the Small Multidrug Resistance FamilyR01AI108889 · NIAID · NEW YORK UNIVERSITY · PI Nathaniel J. Traaseth · 2014 to 2026
$5.4M
Contribution of LukED to Staphylococcus aureus pathobiologyR01AI105129 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI TORRES, VICTOR J. · 2014 to 2023
$4.9M
Transport Cycle and Inhibition of Human Na+-dicarboxylate Cotransporter NaDC3R01NS108151 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DANENG WANG · 2018 to 2026
$4.1M
Transport Mechanisms and Inhibition of Efflux Pumps in Pathogenic OrganismsR01AI165782 · NIAID · NEW YORK UNIVERSITY · PI SHOHEI KOIDE, Nathaniel J. Traaseth · 2022 to 2026
$4.0M
Mechanisms of MRSA intestinal colonizationR01AI140754 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SHOPSIN, BO · 2020 to 2024
$3.5M
Host-pathogen interactions during hospital adaptation of MRSAR01AI137336 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SHOPSIN, BO, YANAI, ITAI · 2019 to 2022
$3.3M
Training program in Molecular BiophysicsT32GM088118 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI STOKES, DAVID L. · 2010 to 2019
$1.8M
Structural basis of the Ragulator-Rag GTPase complex as a platform for mTOR activation on the lysosomal surfaceR01GM121994 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WANG, DANENG · 2017 to 2020
$1.5M
Structural and mechanistic studies of INDY proteinsR01DK099023 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WANG, DANENG · 2013 to 2016
$1.5M
Investigating the relationship between antibiotics and nosocomial pneumonia.R21AI149350 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TORRES, VICTOR J. · 2020 to 2021
$466k
NIAID NIH HHS R01 AI099394NIAID NIH HHS R01 AI105129NIAID NIH HHS R01 AI108889NIAID NIH HHS R01 AI137336NIAID NIH HHS R01 AI140754NIAID NIH HHS R01 AI165782NIAID NIH HHS R21 AI149350NIDDK NIH HHS R01 DK099023NIGMS NIH HHS R01 GM121994NIGMS NIH HHS R35 GM130333NIGMS NIH HHS T32 GM088118NINDS NIH HHS R01 NS108151
6 · The paper itself

Abstract

Membrane protein efflux pumps confer antibiotic resistance by extruding structurally distinct compounds and lowering their intracellular concentration. Yet, there are no clinically approved drugs to inhibit efflux pumps, which would potentiate the efficacy of existing antibiotics rendered ineffective by drug efflux. Here we identified synthetic antigen-binding fragments (Fabs) that inhibit the quinolone transporter NorA from methicillin-resistant Staphylococcus aureus (MRSA). Structures of two NorA-Fab complexes determined using cryo-electron microscopy reveal a Fab loop deeply inserted in the substrate-binding pocket of NorA. An arginine residue on this loop interacts with two neighboring aspartate and glutamate residues essential for NorA-mediated antibiotic resistance in MRSA. Peptide mimics of the Fab loop inhibit NorA with submicromolar potency and ablate MRSA growth in combination with the antibiotic norfloxacin. These findings establish a class of peptide inhibitors that block antibiotic efflux in MRSA by targeting indispensable residues in NorA without the need for membrane permeability.

Indexed as

Methicillin-Resistant Staphylococcus aureusStaphylococcal InfectionsAnti-Bacterial AgentsATP-Binding Cassette, Sub-Family C ProteinsBacterial ProteinsCryoelectron MicroscopyHumansMicrobial Sensitivity TestsStaphylococcus aureusAnti-Bacterial AgentsATP-Binding Cassette, Sub-Family C ProteinsBacterial Proteins

Identifiers

PMID35361990
PMCPMC9246859
OpenAlexW4221079645

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.