Evidence map›Paper›PMID 35358259›Full record

ArticlePloS one2022

Clinical utility of comprehensive genomic profiling in Japan: Result of PROFILE-F study.

Yasuko Aoyagi, Yoshihito Kano, Kohki Tohyama, Shotaro Matsudera, Yuichi Kumaki, Kenta Takahashi, Takahiro Mitsumura, Yohei Harada, Akemi Sato, Hideaki Nakamura and 19 more

Abstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

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  14. Availability of genome-matched therapy based on clinical practice.International journal of clinical oncology · 2024
    Article
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  20. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Yasuko AoyagiDepartment of Precision Cancer Medicine, Center for Innovative Cancer Treatment, Tokyo Medical and Dental University, Tokyo, Japan.ORCID 0000-0002-1856-4336
Yoshihito KanoDepartment of Precision Cancer Medicine, Center for Innovative Cancer Treatment, Tokyo Medical and Dental University, Tokyo, Japan.
Kohki TohyamaDepartment of Precision Cancer Medicine, Center for Innovative Cancer Treatment, Tokyo Medical and Dental University, Tokyo, Japan.
Shotaro MatsuderaDepartment of Precision Cancer Medicine, Center for Innovative Cancer Treatment, Tokyo Medical and Dental University, Tokyo, Japan.
Yuichi KumakiDepartment of Specialized Surgeries, Tokyo Medical and Dental University, Tokyo, Japan.
Kenta TakahashiDepartment of Obstetrics and Gynecology, Tokyo Medical and Dental University, Tokyo, Japan.
Takahiro MitsumuraDepartment of Respiratory Medicine, Tokyo Medical and Dental University, Tokyo, Japan.
Yohei HaradaDivision of Hematology, Respiratory Medicine and Oncology, Faculty of Medicine, Saga University, Saga, Japan.
Akemi SatoDepartment of Transfusion Medicine, Saga University Hospital, Saga, Japan.
Hideaki NakamuraDepartment of Transfusion Medicine, Saga University Hospital, Saga, Japan.ORCID 0000-0002-0449-7830
Eisaburo SueokaDepartment of Transfusion Medicine, Saga University Hospital, Saga, Japan.
Naoko AraganeDivision of Hematology, Respiratory Medicine and Oncology, Faculty of Medicine, Saga University, Saga, Japan.
Koichiro KimuraDepartment of Radiology, Tokyo Medical and Dental University, Tokyo, Japan.
Iichiro OnishiDepartment of Pathology, Tokyo Medical and Dental University, Tokyo, Japan.
Akira TakemotoDepartment of Bioresource Research Center, Tokyo Medical and Dental University, Tokyo, Japan.
Keiichi AkahoshiDepartment of Hepato-Biliary-Pancreatic Surgery, Tokyo Medical and Dental University, Tokyo, Japan.
Hiroaki OnoDepartment of Hepato-Biliary-Pancreatic Surgery, Tokyo Medical and Dental University, Tokyo, Japan.
Toshiaki IshikawaDepartment of Specialized Surgeries, Tokyo Medical and Dental University, Tokyo, Japan.
Masanori TokunagaDepartment of Gastrointestinal Surgery, Tokyo Medical and Dental University, Tokyo, Japan.
Tsuyoshi NakagawaDepartment of Specialized Surgeries, Tokyo Medical and Dental University, Tokyo, Japan.ORCID 0000-0003-1967-0445
Noriko OshimaDepartment of Obstetrics and Gynecology, Tokyo Medical and Dental University, Tokyo, Japan.
Reiko NakamuraDepartment of Obstetrics and Gynecology, Tokyo Medical and Dental University, Tokyo, Japan.
Masatoshi TakagiDepartment of Pediatrics, Tokyo Medical and Dental University, Tokyo, Japan.
Takahiro AsakageDepartment of Head and Neck Surgery, Tokyo Medical and Dental University, Tokyo, Japan.
Hiroyuki UetakeDepartment of Specialized Surgeries, Tokyo Medical and Dental University, Tokyo, Japan.
Minoru TanabeDepartment of Hepato-Biliary-Pancreatic Surgery, Tokyo Medical and Dental University, Tokyo, Japan.
Satoshi MiyakeDepartment of Clinical Oncology, Tokyo Medical and Dental University, Tokyo, Japan.
Yusuke KinugasaDepartment of Gastrointestinal Surgery, Tokyo Medical and Dental University, Tokyo, Japan.
Sadakatsu IkedaDepartment of Precision Cancer Medicine, Center for Innovative Cancer Treatment, Tokyo Medical and Dental University, Tokyo, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionClinical sequencing has provided molecular and therapeutic insights into the field of clinical oncology. However, despite its significance, its clinical utility in Japanese patients remains unknown. Here, we examined the clinical utility of tissue-based clinical sequencing with FoundationOne® CDx and FoundationOne® Heme. Between August 2018 and August 2019, 130 Japanese pretreated patients with advanced solid tumors were tested with FoundationOne® CDx or FoundationOne® Heme.

resultsThe median age of 130 patients was 60.5 years (range: 3 to 84 years), and among them, 64 were males and 66 were females. Major cancer types were gastrointestinal cancer (23 cases) and hepatic, biliary, and pancreatic cancer (21 cases). A molecular tumor board had been completed on all 130 cases by October 31, 2019. The median number of gene alterations detected by Foundation testing, excluding variants of unknown significance (VUS) was 4 (ranged 0 to 21) per case. Of the 130 cases, one or more alterations were found in 123 cases (94.6%), and in 114 cases (87.7%), actionable alterations with candidates for therapeutic agents were found. In 29 (22.3%) of them, treatment corresponding to the gene alteration was performed. Regarding secondary findings, 13 cases (10%) had an alteration suspected of a hereditary tumor. Of the 13 cases, only one case received a definite diagnosis of hereditary tumor.

conclusionsOur study showed that clinical sequencing might be useful for detecting gene alterations in various cancer types and exploring treatment options. However, many issues still need to be improved.

Indexed as

Genetic Predisposition to DiseasePancreatic NeoplasmsAdolescentAdultAgedAged, 80 and overBiomarkers, TumorChildChild, PreschoolFemaleHemeHigh-Throughput Nucleotide SequencingHumansJapanMaleMiddle AgedBiomarkers, TumorHeme

Identifiers

PMID35358259
PMCPMC8970371

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.