Evidence map›Paper›PMID 35356705›Full record

ArticleACS catalysis2022

Essential Functional Interplay of the Catalytic Groups in Acid Phosphatase.

Martin Pfeiffer, Rory M Crean, Catia Moreira, Antonietta Parracino, Gustav Oberdorfer, Lothar Brecker, Friedrich Hammerschmidt, Shina Caroline Lynn Kamerlin, Bernd Nidetzky

Open access · hybridAbstract read
In one paragraph

Article in ACS catalysis, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Martin PfeifferInstitute of Biotechnology and Biochemical Engineering, Graz University of Technology, NAWI Graz, Petersgasse 12/I, 8010 Graz, Austria.
Rory M CreanDepartment of Chemistry-BMC, Uppsala University, BMC Box 576, S-751 23 Uppsala, Sweden.
Catia MoreiraDepartment of Chemistry-BMC, Uppsala University, BMC Box 576, S-751 23 Uppsala, Sweden.ORCID https://orcid.org/0000-0002-6904-2511
Antonietta ParracinoDepartment of Chemistry-BMC, Uppsala University, BMC Box 576, S-751 23 Uppsala, Sweden.
Gustav OberdorferInstitute of Biochemistry, Graz University of Technology, NAWI Graz, Petersgasse 12/II, 8010 Graz, Austria.
Lothar BreckerDepartment of Organic Chemistry, University of Vienna, Währingerstraße 38, 1090 Vienna, Austria.
Friedrich HammerschmidtDepartment of Organic Chemistry, University of Vienna, Währingerstraße 38, 1090 Vienna, Austria.ORCID https://orcid.org/0000-0003-2193-1405
Shina Caroline Lynn KamerlinDepartment of Chemistry-BMC, Uppsala University, BMC Box 576, S-751 23 Uppsala, Sweden.ORCID https://orcid.org/0000-0002-3190-1173
Bernd NidetzkyInstitute of Biotechnology and Biochemical Engineering, Graz University of Technology, NAWI Graz, Petersgasse 12/I, 8010 Graz, Austria.ORCID https://orcid.org/0000-0002-5030-2643
Uppsala University · SEGraz University of Technology · ATUniversity of Vienna · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cooperative interplay between the functional devices of a preorganized active site is fundamental to enzyme catalysis. An in-depth understanding of this phenomenon is central to elucidating the remarkable efficiency of natural enzymes and provides an essential benchmark for enzyme design and engineering. Here, we study the functional interconnectedness of the catalytic nucleophile (His18) in an acid phosphatase by analyzing the consequences of its replacement with aspartate. We present crystallographic, biochemical, and computational evidence for a conserved mechanistic pathway via a phospho-enzyme intermediate on Asp18. Linear free-energy relationships for phosphoryl transfer from phosphomonoester substrates to His18/Asp18 provide evidence for the cooperative interplay between the nucleophilic and general-acid catalytic groups in the wild-type enzyme, and its substantial loss in the H18D variant. As an isolated factor of phosphatase efficiency, the advantage of a histidine compared to an aspartate nucleophile is ∼10

Identifiers

PMID35356705
PMCPMC8938923
OpenAlexW4226369456

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.