Evidence map›Paper›PMID 35354911›Full record

ArticleScientific reports2022

Engineering nonlinear epileptic biomarkers using deep learning and Benford's law.

Joseph Caffarini, Klevest Gjini, Brinda Sevak, Roger Waleffe, Mariel Kalkach-Aparicio, Melanie Boly, Aaron F Struck

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Joseph CaffariniDepartment of Neurology, University of Wisconsin-Madison, 1685 Highland Ave, Madison, WI, 53705, USA. Caffarini@neurology.wisc.edu.
Klevest GjiniDepartment of Neurology, University of Wisconsin-Madison, 1685 Highland Ave, Madison, WI, 53705, USA.
Brinda SevakDepartment of Neurology, University of Wisconsin-Madison, 1685 Highland Ave, Madison, WI, 53705, USA.
Roger WaleffeDepartment of Computer Science, University of Wisconsin-Madison, Madison, USA.
Mariel Kalkach-AparicioDepartment of Neurology, University of Wisconsin-Madison, 1685 Highland Ave, Madison, WI, 53705, USA.
Melanie BolyDepartment of Neurology, University of Wisconsin-Madison, 1685 Highland Ave, Madison, WI, 53705, USA.
Aaron F StruckDepartment of Neurology, University of Wisconsin-Madison, 1685 Highland Ave, Madison, WI, 53705, USA. Struck@neurology.wisc.edu.
University of Wisconsin–Madison · USWilliam S. Middleton Memorial Veterans Hospital · US

Funding

The Juvenile Myoclonic Epilepsy Connectome ProjectR01NS111022 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI STRUCK, AARON F · 2020 to 2024
$3.1M
electroencephalography and single-unit recordingsK23NS112473 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI BOLY, MELANIE · 2021 to 2025
$815k
NINDS NIH HHS K23 NS112473NINDS NIH HHS K23NS112473NINDS NIH HHS R01 NS111022NINDS NIH HHS R01NS111022
6 · The paper itself

Abstract

In this study, we designed two deep neural networks to encode 16 features for early seizure detection in intracranial EEG and compared them and their frequency responses to 16 widely used engineered metrics to interpret their properties: epileptogenicity index (EI), phase locked high gamma (PLHG), time and frequency domain Cho Gaines distance (TDCG, FDCG), relative band powers, and log absolute band powers (from alpha, beta, theta, delta, low gamma, and high gamma bands). The deep learning models were pretrained for seizure identification on the time and frequency domains of 1 s, single-channel clips of 127 seizures (from 25 different subjects) using "leave-one-out" (LOO) cross validation. Each neural network extracted unique feature spaces that were interpreted using spectral power modulations before being used to train a Random Forest Classifier (RFC) for seizure identification. The Gini Importance of each feature was calculated from the pretrained RFC, enabling the most significant features (MSFs) for each task to be identified. The MSFs were extracted to train another RFC for UPenn and Mayo Clinic's Seizure Detection Kaggle Challenge. They obtained an AUC score of 0.93, demonstrating a transferable method to identify and interpret biomarkers for seizure detection.

Indexed as

Deep LearningEpilepsyBiomarkersElectroencephalographyHumansSignal Processing, Computer-AssistedBiomarkers

Identifiers

PMID35354911
PMCPMC8967852
OpenAlexW4226181581

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.