Evidence map›Paper›PMID 35354884›Full record

ArticleScientific reports2022

Cistrome and transcriptome analysis identifies unique androgen receptor (AR) and AR-V7 splice variant chromatin binding and transcriptional activities.

Paul Basil, Matthew J Robertson, William E Bingman, Amit K Dash, William C Krause, Ayesha A Shafi, Badrajee Piyarathna, Cristian Coarfa, Nancy L Weigel

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Paul BasilDepartment of Molecular & Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA. basil@connect.hku.hk.
Matthew J RobertsonDepartment of Molecular & Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
William E BingmanDepartment of Molecular & Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
Amit K DashDepartment of Molecular & Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
William C KrauseDepartment of Molecular & Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
Ayesha A ShafiDepartment of Molecular & Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
Badrajee PiyarathnaDepartment of Molecular & Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
Cristian CoarfaDepartment of Molecular & Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA. coarfa@bcm.edu.
Nancy L WeigelDepartment of Molecular & Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA. nweigel@bcm.edu.
Baylor College of Medicine · US

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Michael M Ittmann · 2007 to 2026
$73.9M
Project 5: Pyolytic conversion of PAHs in contaminated sediments into char to eliminate toxicity and enhance soil fertilityP42ES027725 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI BHAGAVATULA MOORTHY · 2020 to 2026
$17.8M
Translational Research Support CoreP30ES030285 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI Casey W Wright · 2019 to 2026
$14.7M
NCI NIH HHS P30 CA125123NCI NIH HHS P30CA125123NIEHS NIH HHS 1P30ES030285NIEHS NIH HHS P30 ES030285NIEHS NIH HHS P42 ES027725
6 · The paper itself

Abstract

The constitutively active androgen receptor (AR) splice variant, AR-V7, plays an important role in resistance to androgen deprivation therapy in castration resistant prostate cancer (CRPC). Studies seeking to determine whether AR-V7 is a partial mimic of the AR, or also has unique activities, and whether the AR-V7 cistrome contains unique binding sites have yielded conflicting results. One limitation in many studies has been the low level of AR variant compared to AR. Here, LNCaP and VCaP cell lines in which AR-V7 expression can be induced to match the level of AR, were used to compare the activities of AR and AR-V7. The two AR isoforms shared many targets, but overall had distinct transcriptomes. Optimal induction of novel targets sometimes required more receptor isoform than classical targets such as PSA. The isoforms displayed remarkably different cistromes with numerous differential binding sites. Some of the unique AR-V7 sites were located proximal to the transcription start sites (TSS). A de novo binding motif similar to a half ARE was identified in many AR-V7 preferential sites and, in contrast to conventional half ARE sites that bind AR-V7, FOXA1 was not enriched at these sites. This supports the concept that the AR isoforms have unique actions with the potential to serve as biomarkers or novel therapeutic targets.

Indexed as

Prostatic NeoplasmsReceptors, AndrogenAndrogen AntagonistsChromatinGene Expression ProfilingHumansMaleAndrogen AntagonistsAR protein, humanChromatinReceptors, Androgen

Identifiers

PMID35354884
PMCPMC8969163
OpenAlexW4225490781

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.