Evidence map›Paper›PMID 35354803›Full record

ArticleNature communications2022

Cyclophilin anaCyp40 regulates photosystem assembly and phycobilisome association in a cyanobacterium.

Shivam Yadav, Martin Centola, Mathilda Glaesmann, Denys Pogoryelov, Roman Ladig, Mike Heilemann, L C Rai, Özkan Yildiz, Enrico Schleiff

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Shivam YadavInstitute for Molecular Biosciences, Goethe University Frankfurt, Max von Laue Str. 9, 60438, Frankfurt, Germany.
Martin CentolaMax-Planck-Institute of Biophysics, Max-von-Laue-Straße 3, 60438, Frankfurt, Germany.ORCID http://orcid.org/0000-0003-0956-5705
Mathilda GlaesmannInstitute of Physical and Theoretical Chemistry, Goethe University, Max-von-Laue-Strasse 7, 60438, Frankfurt am Main, Germany.
Denys PogoryelovInstitute for Biochemsitry, Goethe University Frankfurt, Max von Laue Str. 9, 60438, Frankfurt, Germany.
Roman LadigInstitute for Molecular Biosciences, Goethe University Frankfurt, Max von Laue Str. 9, 60438, Frankfurt, Germany.ORCID http://orcid.org/0000-0002-8516-4121
Mike HeilemannInstitute of Physical and Theoretical Chemistry, Goethe University, Max-von-Laue-Strasse 7, 60438, Frankfurt am Main, Germany.ORCID http://orcid.org/0000-0002-9821-3578
L C RaiCentre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh, 221005, India.
Özkan YildizMax-Planck-Institute of Biophysics, Max-von-Laue-Straße 3, 60438, Frankfurt, Germany.ORCID http://orcid.org/0000-0003-3659-2805
Enrico SchleiffInstitute for Molecular Biosciences, Goethe University Frankfurt, Max von Laue Str. 9, 60438, Frankfurt, Germany. schleiff@bio.uni-frankfurt.de.ORCID http://orcid.org/0000-0002-0518-3489
Goethe University Frankfurt · DEMax Planck Institute of Biophysics · DEBanaras Hindu University · IN

Funding

ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale ModelingR01GM129325 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2018 to 2025
$5.2M
NIGMS NIH HHS R01 GM129325
6 · The paper itself

Abstract

Cyclophilins, or immunophilins, are proteins found in many organisms including bacteria, plants and humans. Most of them display peptidyl-prolyl cis-trans isomerase activity, and play roles as chaperones or in signal transduction. Here, we show that cyclophilin anaCyp40 from the cyanobacterium Anabaena sp. PCC 7120 is enzymatically active, and seems to be involved in general stress responses and in assembly of photosynthetic complexes. The protein is associated with the thylakoid membrane and interacts with phycobilisome and photosystem components. Knockdown of anacyp40 leads to growth defects under high-salt and high-light conditions, and reduced energy transfer from phycobilisomes to photosystems. Elucidation of the anaCyp40 crystal structure at 1.2-Å resolution reveals an N-terminal helical domain with similarity to PsbQ components of plant photosystem II, and a C-terminal cyclophilin domain with a substrate-binding site. The anaCyp40 structure is distinct from that of other multi-domain cyclophilins (such as Arabidopsis thaliana Cyp38), and presents features that are absent in single-domain cyclophilins.

Indexed as

CyanobacteriaPhycobilisomesCyclophilinsHumansPhotosystem II Protein ComplexThylakoidsCyclophilinsPhotosystem II Protein ComplexPhycobilisomes

Identifiers

PMID35354803
PMCPMC8967839
OpenAlexW4220805080

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.