Evidence map›Paper›PMID 35354612›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2022

The Lung Microenvironment Instructs Gene Transcription in Neonatal and Adult Alveolar Macrophages.

Asami Honda, Marten A Hoeksema, Mashito Sakai, Sean J Lund, Omar Lakhdari, Lindsay D Butcher, Tara C Rambaldo, Neal M Sekiya, Chanond A Nasamran, Kathleen M Fisch and 3 more

Abstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Immune dysregulation inFrontiers in immunology · 2026
    Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Association of immune cell recruitment and BPD development.Molecular and cellular pediatrics · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Asami HondaDepartment of Pediatrics, University of California, San Diego, La Jolla, CA.ORCID 0000-0001-5028-4388
Marten A HoeksemaDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA.ORCID 0000-0001-5981-121X
Mashito SakaiDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA.ORCID 0000-0002-4908-2727
Sean J LundDepartment of Pediatrics, University of California, San Diego, La Jolla, CA.
Omar LakhdariDepartment of Pediatrics, University of California, San Diego, La Jolla, CA.
Lindsay D ButcherDepartment of Pediatrics, Stanford University School of Medicine, Palo Alto, CA.
Tara C RambaldoSan Diego Center for AIDS Research, San Diego, CA.
Neal M SekiyaSan Diego Center for AIDS Research, San Diego, CA.
Chanond A NasamranCenter for Computational Biology and Bioinformatics, University of California, San Diego, La Jolla, CA.
Kathleen M FischCenter for Computational Biology and Bioinformatics, University of California, San Diego, La Jolla, CA.
Eniko SajtiDepartment of Pediatrics, University of California, San Diego, La Jolla, CA.ORCID 0000-0002-0531-7715
Christopher K GlassDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA.
Lawrence S PrinceDepartment of Pediatrics, Stanford University School of Medicine, Palo Alto, CA; lsprince@stanford.edu.ORCID 0000-0002-7010-4548

Funding

UC San Diego Clinical and Translational Research InstituteUL1TR001442 · NCATS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FIRESTEIN, GARY S, HOGARTH, MICHAEL · 2015 to 2024
$88.3M
VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI David Mitchell Smith · 1994 to 2026
$78.4M
Tissue-specific roles of FXR in CVD and NASHP01HL147835 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WITZTUM, JOSEPH L. · 2020 to 2024
$12.2M
Decoding the Cellular Niches Critical for Lung Maturation and PathogenesisU01HL148867 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUN, XIN · 2019 to 2023
$4.4M
Impact of Early-in-life Disruption of Lung Development on Adult Lung Progenitor FunctionR01HL143256 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PRINCE, LAWRENCE S, SUN, XIN · 2018 to 2021
$2.1M
Transcriptional Control of Lung Macrophage DevelopmentR01HL126703 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HOFFMAN, HAROLD M, PRINCE, LAWRENCE S · 2015 to 2018
$1.6M
Epigenomics of mononuclear phagocytes in prematurity associated lung diseaseK08HL140198 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SAJTI, ENIKO · 2018 to 2022
$886k
Molecular mechanisms of neonatal susceptibility to Group B StreptococcusF31HL146066 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LUND, SEAN J. · 2019 to 2020
$60k
NCATS NIH HHS UL1 TR001442NHLBI NIH HHS F31 HL146066NHLBI NIH HHS K08 HL140198NHLBI NIH HHS P01 HL147835NHLBI NIH HHS R01 HL126703NHLBI NIH HHS R01 HL143256NHLBI NIH HHS U01 HL148867NIAID NIH HHS P30 AI036214
6 · The paper itself

Abstract

Immaturity of alveolar macrophages (AMs) around birth contributes to the susceptibility of newborns to lung disease. However, the molecular features differentiating neonatal and mature, adult AMs are poorly understood. In this study, we identify the unique transcriptomes and enhancer landscapes of neonatal and adult AMs in mice. Although the core AM signature was similar, murine adult AMs expressed higher levels of genes involved in lipid metabolism, whereas neonatal AMs expressed a largely proinflammatory gene profile. Open enhancer regions identified by an assay for transposase-accessible chromatin followed by high-throughput sequencing (ATAC-seq) contained motifs for nuclear receptors, MITF, and STAT in adult AMs and AP-1 and NF-κB in neonatal AMs. Intranasal LPS activated a similar innate immune response in both neonatal and adult mice, with higher basal expression of inflammatory genes in neonates. The lung microenvironment drove many of the distinguishing gene expression and open chromatin characteristics of neonatal and adult AMs. Neonatal mouse AMs retained high expression of some proinflammatory genes, suggesting that the differences in neonatal AMs result from both inherent cell properties and environmental influences.

Indexed as

Macrophages, AlveolarNF-kappa BAnimalsChromatinLungMiceTranscription, GeneticChromatinNF-kappa B

Identifiers

PMID35354612
PMCPMC9012679

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.