Evidence map›Paper›PMID 35354486›Full record

ArticleGenome medicine2022

DNA methylome-wide association study of genetic risk for depression implicates antigen processing and immune responses.

Xueyi Shen, Doretta Caramaschi, Mark J Adams, Rosie M Walker, Josine L Min, Alex Kwong, Gibran Hemani, Genetics of DNA Methylation Consortium, Miruna C Barbu, Heather C Whalley and 8 more

Open access · goldAbstract read
In one paragraph

Article in Genome medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 1 country.

Xueyi ShenDivision of Psychiatry, University of Edinburgh, Royal Edinburgh Hospital, Morningside Park, Edinburgh, EH10 5HF, UK. xueyi.shen@ed.ac.uk.ORCID 0000-0002-0538-4774
Doretta CaramaschiCollege of Life and Environmental Sciences, Psychology, University of Exeter, Exeter, UK.
Mark J AdamsDivision of Psychiatry, University of Edinburgh, Royal Edinburgh Hospital, Morningside Park, Edinburgh, EH10 5HF, UK.
Rosie M WalkerCentre for Clinical Brain Sciences, Chancellor's Building, 49 Little France Crescent, Edinburgh BioQuarter, Edinburgh, UK.
Josine L MinMedical Research Council Integrative Epidemiology Unit, Bristol Medical School, Population Health Sciences, University of Bristol, Bristol, UK.
Alex KwongDivision of Psychiatry, University of Edinburgh, Royal Edinburgh Hospital, Morningside Park, Edinburgh, EH10 5HF, UK.
Gibran HemaniMedical Research Council Integrative Epidemiology Unit, Bristol Medical School, Population Health Sciences, University of Bristol, Bristol, UK.
Genetics of DNA Methylation Consortium
Miruna C BarbuDivision of Psychiatry, University of Edinburgh, Royal Edinburgh Hospital, Morningside Park, Edinburgh, EH10 5HF, UK.
Heather C WhalleyDivision of Psychiatry, University of Edinburgh, Royal Edinburgh Hospital, Morningside Park, Edinburgh, EH10 5HF, UK.
Sarah E HarrisLothian Birth Cohorts group, Department of Psychology, The University of Edinburgh, Edinburgh, UK.
Ian J DearyLothian Birth Cohorts group, Department of Psychology, The University of Edinburgh, Edinburgh, UK.
Stewart W MorrisCentre for Genomic and Experimental Medicine, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, UK.
Simon R CoxLothian Birth Cohorts group, Department of Psychology, The University of Edinburgh, Edinburgh, UK.
Caroline L ReltonMedical Research Council Integrative Epidemiology Unit, Bristol Medical School, Population Health Sciences, University of Bristol, Bristol, UK.
Riccardo E MarioniCentre for Genomic and Experimental Medicine, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, UK.
Kathryn L EvansCentre for Genomic and Experimental Medicine, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, UK.
Andrew M McIntoshDivision of Psychiatry, University of Edinburgh, Royal Edinburgh Hospital, Morningside Park, Edinburgh, EH10 5HF, UK. andrew.mcintosh@ed.ac.uk.
Royal Edinburgh Hospital · GBEdinburgh Cancer Research · GBNHS Lothian · GBUniversity of Bristol · GBUniversity of Exeter · GB

Funding

Evaluating Longitudinal Changes in the Human Structural Connectome in Relation to Cognitive AgingR01AG054628 · NIA · UNIVERSITY OF TEXAS AT AUSTIN · PI TUCKER-DROB, ELLIOT MAX · 2017 to 2021
$2.7M
Medical Research Council G0700704Medical Research Council G0701120Medical Research Council G1001245Medical Research Council G9815508Medical Research Council MC_PC_15018Medical Research Council MC_PC_19009Medical Research Council MC_UU_00011/5Medical Research Council MR/M013111/1Medical Research Council MR/R024065/1NIA NIH HHS R01 AG054628NIH HHS R01AG054628Wellcome Trust 104036/Z/14/ZWellcome Trust 208806/Z/17/Z
6 · The paper itself

Abstract

backgroundDepression is a disabling and highly prevalent condition where genetic and epigenetic, such as DNA methylation (DNAm), differences contribute to disease risk. DNA methylation is influenced by genetic variation but the association between polygenic risk of depression and DNA methylation is unknown.

methodsWe investigated the association between polygenic risk scores (PRS) for depression and DNAm by conducting a methylome-wide association study (MWAS) in Generation Scotland (N = 8898, mean age = 49.8 years) with replication in the Lothian Birth Cohorts of 1921 and 1936 and adults in the Avon Longitudinal Study of Parents and Children (ALSPAC) (N

resultsWidespread associations (N

conclusionsPRS for depression, especially those constructed from genome-wide significant genetic risk variants, showed methylome-wide differences associated with immune responses. Findings from MR analysis provided evidence for causal effect of DNAm to depression.

Indexed as

Antigen PresentationEpigenomeAdolescentAdultChildDepressionHumansLongitudinal StudiesMendelian Randomization AnalysisMiddle AgedRisk FactorsDepressionDNA methylationMendelian randomisationMethylome-wide association studyPolygenic risk scoreReplication

Identifiers

PMID35354486
PMCPMC8969265
OpenAlexW4225910241

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.