Evidence map›Paper›PMID 35353448›Full record

ArticleTransboundary and emerging diseases2022

First characterization of the parasite Haplosporidium costale in France and development of a real-time PCR assay for its rapid detection in the Pacific oyster, Crassostrea gigas.

Isabelle Arzul, Céline Garcia, Bruno Chollet, Delphine Serpin, Coralie Lupo, Mathilde Noyer, Delphine Tourbiez, Chloé Berland, Lionel Dégremont, Marie-Agnès Travers

Open access · hybridAbstract read
In one paragraph

Article in Transboundary and emerging diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
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  4. Microorganisms · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Isabelle ArzulIfremer, RBE-ASIM, Station de La Tremblade, La Tremblade, France.ORCID https://orcid.org/0000-0001-5436-5927
Céline GarciaIfremer, RBE-ASIM, Station de La Tremblade, La Tremblade, France.
Bruno CholletIfremer, RBE-ASIM, Station de La Tremblade, La Tremblade, France.
Delphine SerpinIfremer, RBE-ASIM, Station de La Tremblade, La Tremblade, France.
Coralie LupoRéseau d'EpidémioSurveillance en Pathologie Equine, Saint-Contest, France.
Mathilde NoyerIfremer, RBE-ASIM, Station de La Tremblade, La Tremblade, France.
Delphine TourbiezIfremer, RBE-ASIM, Station de La Tremblade, La Tremblade, France.
Chloé BerlandIfremer, RBE-ASIM, Station de La Tremblade, La Tremblade, France.
Lionel DégremontIfremer, RBE-ASIM, Station de La Tremblade, La Tremblade, France.
Marie-Agnès TraversIHPE, Université de Montpellier, CNRS, Ifremer, Université de Perpignan via Domitia, Montpellier, France.
Ifremer · FRCentre National de la Recherche Scientifique · FR

Funding

DGALInstitut Français de Recherche pour l'Exploitation de la Mer
6 · The paper itself

Abstract

The Pacific cupped oyster Crassostrea gigas is one of the most 'globalized' marine invertebrates and its production is predominant in many parts of the world including Europe. However, it is threatened by mortality events associated with pathogenic microorganisms such as the virus OsHV-1 and the bacteria Vibrio aestuarianus. C. gigas is also a host for protozoan parasites including haplosporidians. In contrast with Haplosporidium nelsoni previously detected in Europe, H. costale was considered exotic although its presence in French oysters was suggested in the 1980s based on ultrastructural examination. Here, a combination of light and transmission electron microscopy, PCR and sequencing allowed characterizing the presence of the parasite in the context of low mortality events which occurred in 2019 in France. Histological observation revealed the presence of uninucleated, plasmodial and spore stages within the connective tissues of some oysters. Ultrastructural features were similar to H. costale ones in particular the presence of axe-shaped haplosporosomes in spore cytoplasms. Three fragments of the genome including partial small subunit rRNA gene, the ITS-1, 5.8S and ITS-2 array and part of the actin gene were successfully sequenced and grouped with H. costale homologous sequences. This is the first time that the presence of H. costale was confirmed in C. gigas in France. Furthermore, a TaqMan real-time PCR assay was developed and validated [DSe = 92.6% (78.2-99.8) and DSp = 95.5% (92.3-98.6)] to enable the rapid and specific detection of the parasite. The application of the PCR assay on archived samples revealed that the parasite has been present in French oyster populations at least since 2008. Considering the little information available on this parasite, the newly developed TaqMan assay will be very helpful to investigate the temporal and geographic distribution and the life cycle of the parasite in France and more generally in C. gigas geographic range.

Indexed as

CrassostreaParasitesActinsAnimalsBase SequenceReal-Time Polymerase Chain ReactionActinsCrassostrea gigasHaplosporidaHaplosporidium costaleoysterparasitereal-time PCR

Identifiers

PMID35353448
PMCPMC9790386
OpenAlexW4220731740

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.