Evidence map›Paper›PMID 35353191›Full record

ArticleG3 (Bethesda, Md.)2022

Applied phenomics and genomics for improving barley yellow dwarf resistance in winter wheat.

Paula Silva, Byron Evers, Alexandria Kieffaber, Xu Wang, Richard Brown, Liangliang Gao, Allan Fritz, Jared Crain, Jesse Poland

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 3 countries.

Paula SilvaDepartment of Plant Pathology, College of Agriculture, Kansas State University, Manhattan, KS 66506, USA.ORCID 0000-0003-2655-2949
Byron EversDepartment of Plant Pathology, College of Agriculture, Kansas State University, Manhattan, KS 66506, USA.ORCID 0000-0003-1840-5842
Alexandria KieffaberDepartment of Plant Pathology, College of Agriculture, Kansas State University, Manhattan, KS 66506, USA.
Xu WangDepartment of Plant Pathology, College of Agriculture, Kansas State University, Manhattan, KS 66506, USA.ORCID 0000-0002-7144-6865
Richard BrownDepartment of Plant Pathology, College of Agriculture, Kansas State University, Manhattan, KS 66506, USA.
Liangliang GaoDepartment of Plant Pathology, College of Agriculture, Kansas State University, Manhattan, KS 66506, USA.ORCID 0000-0002-8562-0027
Allan FritzDepartment of Agronomy, College of Agriculture, Kansas State University, Manhattan, KS 66506, USA.ORCID 0000-0003-2574-8675
Jared CrainDepartment of Plant Pathology, College of Agriculture, Kansas State University, Manhattan, KS 66506, USA.ORCID 0000-0001-9484-8325
Jesse PolandDepartment of Plant Pathology, College of Agriculture, Kansas State University, Manhattan, KS 66506, USA.ORCID 0000-0002-7856-1399
Kansas State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Barley yellow dwarf is one of the major viral diseases of cereals. Phenotyping barley yellow dwarf in wheat is extremely challenging due to similarities to other biotic and abiotic stresses. Breeding for resistance is additionally challenging as the wheat primary germplasm pool lacks genetic resistance, with most of the few resistance genes named to date originating from a wild relative species. The objectives of this study were to (1) evaluate the use of high-throughput phenotyping to improve barley yellow dwarf assessment; (2) identify genomic regions associated with barley yellow dwarf resistance; and (3) evaluate the ability of genomic selection models to predict barley yellow dwarf resistance. Up to 107 wheat lines were phenotyped during each of 5 field seasons under both insecticide treated and untreated plots. Across all seasons, barley yellow dwarf severity was lower within the insecticide treatment along with increased plant height and grain yield compared with untreated entries. Only 9.2% of the lines were positive for the presence of the translocated segment carrying the resistance gene Bdv2. Despite the low frequency, this region was identified through association mapping. Furthermore, we mapped a potentially novel genomic region for barley yellow dwarf resistance on chromosome 5AS. Given the variable heritability of the trait (0.211-0.806), we obtained a predictive ability for barley yellow dwarf severity ranging between 0.06 and 0.26. Including the presence or absence of Bdv2 as a covariate in the genomic selection models had a large effect for predicting barley yellow dwarf but almost no effect for other observed traits. This study was the first attempt to characterize barley yellow dwarf using field-high-throughput phenotyping and apply genomic selection to predict disease severity. These methods have the potential to improve barley yellow dwarf characterization, additionally identifying new sources of resistance will be crucial for delivering barley yellow dwarf resistant germplasm.

Indexed as

HordeumInsecticidesEdible GrainGenomicsPhenomicsPhenotypePlant BreedingPlant DiseasesQuantitative Trait LociSeasonsTriticumInsecticidesbarley yellow dwarf (BYD)genome-wide association mapping (GWAS)genomic selection (GS)high-throughput phenotyping (HTP)resistancetoleranceTriticum aestivumvirus

Identifiers

PMID35353191
PMCPMC9258586
OpenAlexW4226114491

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.