Evidence map›Paper›PMID 35352981›Full record

ArticleThe CRISPR journal2022

Site-Specific Labeling Reveals Cas9 Induces Partial Unwinding Without RNA/DNA Pairing in Sequences Distal to the PAM.

Yue Li, Yukang Liu, Jaideep Singh, Narin S Tangprasertchai, Ravi Trivedi, Yun Fang, Peter Z Qin

Abstract read
In one paragraph

Article in The CRISPR journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yue LiDepartment of Chemistry and University of Southern California, Los Angeles, California, USA.
Yukang LiuDepartment of Chemistry and University of Southern California, Los Angeles, California, USA.
Jaideep SinghDepartment of Chemistry and University of Southern California, Los Angeles, California, USA.
Narin S TangprasertchaiDepartment of Chemistry and University of Southern California, Los Angeles, California, USA.
Ravi TrivediDepartment of Chemistry and University of Southern California, Los Angeles, California, USA.
Yun FangDepartment of Chemistry and University of Southern California, Los Angeles, California, USA.
Peter Z QinDepartment of Chemistry and University of Southern California, Los Angeles, California, USA.

Funding

Acquisition of a Pulse Electron Paramagnetic Resonance SpectrometerS10RR028992 · NCRR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI QIN, PETER Z · 2010 to 2010
$1.0M
NCRR NIH HHS S10 RR028992
6 · The paper itself

Abstract

CRISPR-Cas9 is an RNA-guided nuclease that has been widely adapted for genome engineering. A key determinant in Cas9 target selection is DNA duplex unwinding to form an R-loop, in which the single-stranded RNA guide hybridizes with one of the DNA strands. To advance understanding on DNA unwinding by Cas9, we combined two types of spectroscopic label, 2-aminopurine and nitroxide spin-label, to investigate unwinding at a specific DNA base pair induced by

Indexed as

CRISPR-Cas SystemsRNADNAEndonucleasesGene EditingDNAEndonucleasesRNA

Identifiers

PMID35352981
PMCPMC9206476

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.