Evidence map›Paper›PMID 35352419›Full record

ArticleCell proliferation2022

Dnmt1 is required for the development of auditory organs via cell cycle arrest and Fgf signalling.

Dongmei Tang, Shimei Zheng, Zhiwei Zheng, Chang Liu, Jiner Zhang, Renchun Yan, Cheng Wu, Na Zuo, Lijuan Wu, Hongfei Xu and 2 more

Open access · goldAbstract read
In one paragraph

Article in Cell proliferation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Dongmei TangENT Institute and Otorhinolaryngology Department, Eye and ENT Hospital, NHC Key Laboratory of Hearing Medicine Research, Fudan University, Shanghai, China.ORCID https://orcid.org/0000-0001-9414-4934
Shimei ZhengDepartment of Otolaryngology-Head and Neck Surgery, Yijishan Hospital of Wannan Medical College, Wuhu, China.ORCID https://orcid.org/0000-0003-2852-5709
Zhiwei ZhengENT Institute and Otorhinolaryngology Department, Eye and ENT Hospital, NHC Key Laboratory of Hearing Medicine Research, Fudan University, Shanghai, China.ORCID https://orcid.org/0000-0003-0943-6831
Chang LiuENT Institute and Otorhinolaryngology Department, Eye and ENT Hospital, NHC Key Laboratory of Hearing Medicine Research, Fudan University, Shanghai, China.ORCID https://orcid.org/0000-0002-3932-3988
Jiner ZhangDepartment of Otolaryngology-Head and Neck Surgery, Yijishan Hospital of Wannan Medical College, Wuhu, China.ORCID https://orcid.org/0000-0002-2299-3811
Renchun YanDepartment of Otolaryngology-Head and Neck Surgery, Yijishan Hospital of Wannan Medical College, Wuhu, China.ORCID https://orcid.org/0000-0003-1658-2677
Cheng WuDepartment of Otolaryngology-Head and Neck Surgery, Yijishan Hospital of Wannan Medical College, Wuhu, China.ORCID https://orcid.org/0000-0002-9701-7794
Na ZuoDepartment of Otolaryngology-Head and Neck Surgery, Yijishan Hospital of Wannan Medical College, Wuhu, China.ORCID https://orcid.org/0000-0001-6835-601X
Lijuan WuDepartment of Otolaryngology-Head and Neck Surgery, Yijishan Hospital of Wannan Medical College, Wuhu, China.ORCID https://orcid.org/0000-0001-9338-4696
Hongfei XuDepartment of Forensic Medicine, Soochow University, Suzhou, China.ORCID https://orcid.org/0000-0002-9293-020X
Shaofeng LiuDepartment of Otolaryngology-Head and Neck Surgery, Yijishan Hospital of Wannan Medical College, Wuhu, China.ORCID https://orcid.org/0000-0002-8643-8446
Yingzi HeENT Institute and Otorhinolaryngology Department, Eye and ENT Hospital, NHC Key Laboratory of Hearing Medicine Research, Fudan University, Shanghai, China.ORCID https://orcid.org/0000-0002-2248-2237
Wannan Medical College · CNEye & ENT Hospital of Fudan University · CNSoochow University · CN

Funding

National Natural Science Foundation of China 81800912National Natural Science Foundation of China 81870728National Natural Science Foundation of China 81900931National Natural Science Foundation of China 82071045"Sailing Program" 19YF1406000Shanghai Rising-Star Program 19QA1401800
6 · The paper itself

Abstract

objectivesTo explore the role of DNA methyltransferase 1 (DNMT1) in the development of auditory system using zebrafish as experimental model.

methodsMorpholino oligonucleotide was used to induce Dnmt1 deficiency. RNA sequencing, in situ hybridization (ISH), whole genomic bisulfide sequencing (WGBS) and immunostaining were used to investigate the morphologic alterations and mechanisms.

resultsWe found that downregulation of Dnmt1 induced decreased number of neuromasts and repressed cell proliferation of primordium in the developing posterior lateral line system of zebrafish. The ISH data uncovered that Fgf signalling pathway was inhibited and the expression of chemokine members cxcr4b, cxcr7b and cxcl12a were interfered, while lef1 expression was increased after inhibiting Dnmt1. Additionally, Dnmt1 downregulation led to malformed otoliths and deformed semicircular canals, and hair cell differentiation in utricle and saccule was inhibited severely. The in situ staining of otic placode markers pax2/5 and fgf 3/8/10 was decreased when Dnmt1 downregulated. The WGBS analysis demonstrated that the global methylation status was markedly downregulated, and cell cycle genes were among those most differently expressed between Dnmt1 morphants and the controls. Further ISH analysis confirmed the findings by RNA-seq and WGBS assay that cdkn1a and tp53 were both upregulated after knockdown of Dnmt1.

conclusionOur results revealed that Dnmt1 is essential for the development of zebrafish auditory organ through regulating cell cycle genes together with Wnt and Fgf signalling pathways.

Indexed as

Lateral Line SystemZebrafishAnimalsCell Cycle CheckpointsCell ProliferationDNA (Cytosine-5-)-Methyltransferase 1Zebrafish ProteinsDNA (Cytosine-5-)-Methyltransferase 1Dnmt1 protein, zebrafishZebrafish Proteins

Identifiers

PMID35352419
PMCPMC9136517
OpenAlexW4221110203

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.